Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL136221.1-201ENST00000621449 509 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 OXSM-209ENST00000626005 309 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AL049767.1-201ENST00000636811 514 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 EIF1-203ENST00000469257 2330 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 LRRC39-203ENST00000370138 1466 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AL445437.1-201ENST00000623157 3087 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 AC006026.1-201ENST00000444025 1803 ntBASIC5.04□□□□□ -1.6
CCDC140Q96MF4 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 NUP210L-201ENST00000271854 5424 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
CCDC140Q96MF4 SMC1A-202ENST00000375340 9930 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 CREM-217ENST00000439705 2306 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 ZNF322-205ENST00000471278 2675 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 ZNF734P-201ENST00000419494 1534 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 THAP12P4-201ENST00000528321 2266 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 ATMIN-204ENST00000564241 4803 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 DSC1-202ENST00000257198 4225 ntAPPRIS P4 TSL 2 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC011155.1-201ENST00000316512 456 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 RNU4-76P-201ENST00000364509 141 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 RNA5SP279-201ENST00000365513 117 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 Y_RNA.509-201ENST00000384506 99 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 RNU6-332P-201ENST00000391193 108 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AL354719.1-201ENST00000406535 843 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 RNU2-62P-201ENST00000410868 191 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 RNA5SP155-201ENST00000411154 129 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 RNU6-373P-201ENST00000411247 98 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 RPL31P2-201ENST00000413849 377 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC009518.1-202ENST00000415393 1229 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 PVALB-204ENST00000417718 569 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 RPL6-202ENST00000424576 1074 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 RPS20P5-201ENST00000434808 360 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 C4orf26-202ENST00000435974 560 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 SLC6A13-202ENST00000436453 1101 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 COL11A2P1-205ENST00000441798 676 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AL358612.1-201ENST00000452911 481 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC108059.3-201ENST00000456388 214 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 SNORD121B-201ENST00000458838 81 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC128689.1-201ENST00000466206 562 ntTSL 4 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC022206.1-201ENST00000495947 347 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 LINC01333-201ENST00000508083 724 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 PRMT5P1-201ENST00000514351 598 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC004053.1-201ENST00000515127 575 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 OR5B19P-201ENST00000531766 928 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AL133271.1-201ENST00000538229 291 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 RERG-IT1-201ENST00000539734 301 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC006512.2-201ENST00000543250 486 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC079600.3-201ENST00000547898 447 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 GSTP1P1-201ENST00000548078 319 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC125611.2-201ENST00000551907 647 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 HMGN1P26-201ENST00000558737 303 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 ANP32BP3-201ENST00000559213 706 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC104687.2-201ENST00000604442 342 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC005899.6-201ENST00000620729 297 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AP001005.3-201ENST00000622049 129 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC005858.4-201ENST00000623191 700 ntBASIC5.03□□□□□ -1.6
CCDC140Q96MF4 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC5.03□□□□□ -1.6
CCDC140Q96MF4 CAP1P2-201ENST00000417455 1409 ntBASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 113.2 ms