Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 CDC42P1-201ENST00000456658 548 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 RPL6P9-201ENST00000466502 859 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC090673.1-204ENST00000504038 977 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC026414.1-201ENST00000504046 698 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC091860.1-201ENST00000505723 432 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 MTND2P32-201ENST00000521584 1038 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 OR8I1P-201ENST00000529291 931 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AL355095.1-201ENST00000554451 539 ntTSL 2 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AL132857.1-201ENST00000555180 708 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC138907.2-201ENST00000561479 866 ntTSL 3 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC145350.4-201ENST00000562827 866 ntTSL 3 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC133485.5-201ENST00000563407 866 ntTSL 3 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 MIR4737-201ENST00000583979 81 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC115621.1-201ENST00000604653 858 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AL583856.2-201ENST00000606298 543 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC093799.2-201ENST00000610062 578 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC022106.2-201ENST00000620114 757 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC015871.5-202ENST00000623252 701 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AP000770.2-201ENST00000623694 100 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC112694.2-201ENST00000623697 768 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC008993.2-201ENST00000631744 806 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 MIR6830-201ENST00000636015 70 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC017104.5-201ENST00000637647 639 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC006042.3-201ENST00000454684 1469 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 AC092162.3-201ENST00000624511 1624 ntBASIC4.1□□□□□ -1.75
PDLIM3Q53GG5 UTP20-201ENST00000261637 9025 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 NEK11-207ENST00000508196 1938 ntAPPRIS P3 TSL 2 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 LUZP2-207ENST00000533227 5016 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 SDAD1P1-202ENST00000524156 2051 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 RNU1-87P-201ENST00000363727 170 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 SNORA2.3-201ENST00000383920 135 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AL078604.1-201ENST00000404609 466 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 OR2AM1P-201ENST00000422137 422 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC092648.1-201ENST00000425870 423 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC009263.1-201ENST00000441193 1239 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 OR10R1P-201ENST00000441524 1141 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AL935212.3-201ENST00000450729 284 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 HCG17-214ENST00000453558 732 ntTSL 5 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AL445433.1-201ENST00000457507 257 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 CYCSP34-201ENST00000458172 304 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 PRELID3BP7-201ENST00000503606 469 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC093903.1-201ENST00000507220 405 ntTSL 3 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 RN7SKP283-201ENST00000517197 270 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 OR8G5-201ENST00000524943 1041 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 LRRC37A5P-202ENST00000536054 1095 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC008033.2-201ENST00000542626 177 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC008147.1-201ENST00000551284 325 ntTSL 3 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC009117.1-201ENST00000563948 554 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC034105.4-201ENST00000568304 277 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC012146.1-201ENST00000571138 462 ntTSL 2 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AP001542.2-201ENST00000593141 364 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AL445435.1-201ENST00000604232 665 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 MIR8069-1-201ENST00000616627 86 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 MIR8069-2-201ENST00000621412 86 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC104985.3-201ENST00000623479 597 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 AC090506.2-201ENST00000624521 419 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 CYP4F35P-202ENST00000636121 390 ntBASIC4.09□□□□□ -1.75
PDLIM3Q53GG5 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
PDLIM3Q53GG5 SGMS2-201ENST00000359079 1887 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
PDLIM3Q53GG5 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
PDLIM3Q53GG5 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.76
PDLIM3Q53GG5 ADGRL3-203ENST00000506700 4838 ntTSL 5 BASIC4.09□□□□□ -1.76
PDLIM3Q53GG5 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.08□□□□□ -1.76
PDLIM3Q53GG5 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms