Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 PDCD6IPP1-202ENST00000622242 1064 ntBASIC3.45□□□□□ -1.86
FOXF1Q12946 WASF3-AS1-206ENST00000626779 381 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXF1Q12946 FTO-223ENST00000640179 210 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXF1Q12946 AKAP6-201ENST00000280979 15006 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXF1Q12946 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXF1Q12946 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
FOXF1Q12946 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.45□□□□□ -1.86
FOXF1Q12946 SOS1-202ENST00000402219 8314 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXF1Q12946 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
FOXF1Q12946 HSPA8P1-201ENST00000425843 1833 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 CCDC121-201ENST00000324364 2342 ntAPPRIS P3 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXF1Q12946 MAPK10-373ENST00000641983 6772 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXF1Q12946 LINC01505-206ENST00000637046 4266 ntTSL 5 BASIC3.44□□□□□ -1.86
FOXF1Q12946 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.44□□□□□ -1.86
FOXF1Q12946 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC3.44□□□□□ -1.86
FOXF1Q12946 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXF1Q12946 AP004289.2-201ENST00000444413 1457 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC3.44□□□□□ -1.86
FOXF1Q12946 OR4A15-201ENST00000314706 1035 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
FOXF1Q12946 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXF1Q12946 MIR3074-201ENST00000384885 81 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 RPL32P23-201ENST00000397237 405 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 HLFP1-201ENST00000402375 499 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 AL138878.1-201ENST00000405131 347 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 Z98941.1-201ENST00000407764 100 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 CYP4F29P-201ENST00000420685 446 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXF1Q12946 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXF1Q12946 RPS26P40-201ENST00000435209 294 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC3.44□□□□□ -1.86
FOXF1Q12946 LINC01423-202ENST00000436845 423 ntTSL 2 BASIC3.44□□□□□ -1.86
FOXF1Q12946 SNORA71B-202ENST00000439232 272 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 AL356535.1-201ENST00000440335 398 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 TRBV12-2-201ENST00000489763 344 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC3.44□□□□□ -1.86
FOXF1Q12946 AC108043.1-201ENST00000512696 574 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 NPM1P41-201ENST00000512920 831 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 AC018797.3-201ENST00000513388 1241 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 PCAT1-201ENST00000519319 734 ntTSL 2 BASIC3.44□□□□□ -1.86
FOXF1Q12946 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC3.44□□□□□ -1.86
FOXF1Q12946 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC3.44□□□□□ -1.86
FOXF1Q12946 AC087749.1-202ENST00000585020 566 ntTSL 2 BASIC3.44□□□□□ -1.86
FOXF1Q12946 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXF1Q12946 AL139286.1-201ENST00000604465 483 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 AL137849.1-201ENST00000604767 169 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 AC099669.2-201ENST00000616549 437 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 AL158062.1-201ENST00000619632 745 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 AC079684.1-201ENST00000621405 437 ntBASIC3.44□□□□□ -1.86
FOXF1Q12946 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.44□□□□□ -1.86
FOXF1Q12946 FAM69A-202ENST00000613047 2646 ntTSL 4 BASIC3.44□□□□□ -1.86
FOXF1Q12946 CDH9-201ENST00000231021 3079 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXF1Q12946 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXF1Q12946 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
FOXF1Q12946 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.44□□□□□ -1.86
FOXF1Q12946 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXF1Q12946 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC3.43□□□□□ -1.86
FOXF1Q12946 SLCO1B1-201ENST00000256958 2229 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXF1Q12946 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXF1Q12946 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXF1Q12946 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXF1Q12946 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.43□□□□□ -1.86
FOXF1Q12946 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXF1Q12946 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXF1Q12946 Y_RNA.126-201ENST00000363382 111 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 AL603766.1-201ENST00000407763 664 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 SNORA3.3-201ENST00000408712 125 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 RN7SKP156-201ENST00000410308 342 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 MTND2P15-201ENST00000418575 892 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 AL590609.2-201ENST00000421430 368 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 LINC01204-201ENST00000422047 639 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXF1Q12946 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXF1Q12946 AL138787.1-202ENST00000437804 898 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXF1Q12946 AC092809.1-201ENST00000441469 474 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXF1Q12946 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC3.43□□□□□ -1.86
FOXF1Q12946 RN7SL132P-201ENST00000478131 296 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC3.43□□□□□ -1.86
FOXF1Q12946 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.43□□□□□ -1.86
FOXF1Q12946 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC3.43□□□□□ -1.86
FOXF1Q12946 AC093853.1-201ENST00000515689 483 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 RN7SKP34-201ENST00000516142 244 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 RNA5SP164-201ENST00000516533 110 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 IGKV3OR22-2-201ENST00000517943 313 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 AC008802.1-201ENST00000519121 791 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXF1Q12946 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXF1Q12946 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXF1Q12946 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXF1Q12946 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXF1Q12946 HMGB3P26-201ENST00000560051 582 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.43□□□□□ -1.86
FOXF1Q12946 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC3.43□□□□□ -1.86
FOXF1Q12946 AC091905.1-201ENST00000624400 311 ntBASIC3.43□□□□□ -1.86
FOXF1Q12946 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.43□□□□□ -1.86
FOXF1Q12946 ST7-221ENST00000465133 2155 ntTSL 5 BASIC3.43□□□□□ -1.86
FOXF1Q12946 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
FOXF1Q12946 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC3.43□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 160.5 ms