Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA1P55317 HMGB3P20-201ENST00000417997 600 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 PTP4A1P1-201ENST00000420539 515 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 AL117339.2-201ENST00000430475 180 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 PPIAP17-201ENST00000438507 471 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 AL359378.1-201ENST00000439891 400 ntTSL 5 BASIC3.6□□□□□ -1.83
FOXA1P55317 RPS29P31-201ENST00000446147 164 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 AC006480.1-201ENST00000449887 378 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC3.6□□□□□ -1.83
FOXA1P55317 LINC01768-201ENST00000453347 476 ntTSL 3 BASIC3.6□□□□□ -1.83
FOXA1P55317 OR9M1P-201ENST00000459641 921 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 TRBV8-1-201ENST00000481590 279 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 AC146944.2-203ENST00000502493 354 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 AC139495.1-202ENST00000513164 354 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 IGKV2D-10-201ENST00000520194 281 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC3.6□□□□□ -1.83
FOXA1P55317 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC3.6□□□□□ -1.83
FOXA1P55317 PARP1P2-201ENST00000556806 195 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 HMGB3P26-201ENST00000560051 582 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 MIR4738-201ENST00000579134 87 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 LINC00907-208ENST00000593051 1092 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA1P55317 LINC00310-206ENST00000609947 892 ntTSL 5 BASIC3.6□□□□□ -1.83
FOXA1P55317 DNAJC10-209ENST00000613960 1010 ntTSL 5 BASIC3.6□□□□□ -1.83
FOXA1P55317 AC020978.9-201ENST00000624380 1141 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 AC016717.3-201ENST00000624730 554 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 AP000756.2-201ENST00000624168 2567 ntBASIC3.6□□□□□ -1.83
FOXA1P55317 PLCL1-203ENST00000437704 5979 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA1P55317 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA1P55317 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
FOXA1P55317 PNPT1P2-201ENST00000456768 2050 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
FOXA1P55317 AC245100.2-201ENST00000454544 1679 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA1P55317 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA1P55317 USP33-201ENST00000357428 4155 ntTSL 5 BASIC3.59□□□□□ -1.83
FOXA1P55317 UGT8-202ENST00000394511 2448 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA1P55317 HSPA8P1-201ENST00000425843 1833 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 AC090971.4-201ENST00000560291 1800 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA1P55317 SPRR2C-201ENST00000290702 219 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 MIR423-201ENST00000362201 94 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 SNORA70.2-201ENST00000364506 135 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 C1orf100-202ENST00000366537 483 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA1P55317 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA1P55317 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC3.59□□□□□ -1.83
FOXA1P55317 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA1P55317 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
FOXA1P55317 AC023669.2-201ENST00000436266 239 ntTSL 3 BASIC3.59□□□□□ -1.83
FOXA1P55317 NANOGP10-201ENST00000453325 895 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 AC239798.3-201ENST00000454459 408 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 AC005229.2-201ENST00000456995 399 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC3.59□□□□□ -1.83
FOXA1P55317 AC103987.1-201ENST00000473394 348 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 NPM1P17-201ENST00000479221 602 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 AC068587.1-201ENST00000483613 781 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC3.59□□□□□ -1.83
FOXA1P55317 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC3.59□□□□□ -1.83
FOXA1P55317 AC079203.2-201ENST00000559867 387 ntTSL 2 BASIC3.59□□□□□ -1.83
FOXA1P55317 AC136624.4-201ENST00000573044 370 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC3.59□□□□□ -1.83
FOXA1P55317 AC078899.5-201ENST00000612475 178 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 AP003400.2-201ENST00000624036 666 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 ASNSP1-201ENST00000518311 1939 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 OR11H5P-202ENST00000641612 1325 ntBASIC3.59□□□□□ -1.83
FOXA1P55317 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.59□□□□□ -1.83
FOXA1P55317 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC3.59□□□□□ -1.84
FOXA1P55317 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.59□□□□□ -1.84
FOXA1P55317 PANK1-202ENST00000322191 2513 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
FOXA1P55317 MAPK10-373ENST00000641983 6772 ntBASIC3.59□□□□□ -1.84
FOXA1P55317 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.58□□□□□ -1.84
FOXA1P55317 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 SAGE2P-201ENST00000420011 2126 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 CYP3A4-201ENST00000336411 2153 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 AC007656.2-201ENST00000624902 4547 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 RNA5SP283-201ENST00000365604 119 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC3.58□□□□□ -1.84
FOXA1P55317 PDC-201ENST00000391997 1242 ntAPPRIS P1 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 RPL30P2-201ENST00000414021 291 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 TCEA1P2-201ENST00000420496 906 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 OR8F1P-201ENST00000425243 930 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXA1P55317 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXA1P55317 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC3.58□□□□□ -1.84
FOXA1P55317 AC009263.1-201ENST00000441193 1239 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXA1P55317 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC3.58□□□□□ -1.84
FOXA1P55317 RPS3AP50-201ENST00000487064 803 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 TPT1P3-201ENST00000492841 512 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 RN7SL323P-201ENST00000494712 295 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC3.58□□□□□ -1.84
FOXA1P55317 LINC01339-203ENST00000519336 561 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXA1P55317 OR7E13P-201ENST00000526052 910 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
FOXA1P55317 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXA1P55317 AL355096.1-201ENST00000553561 447 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXA1P55317 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC3.58□□□□□ -1.84
FOXA1P55317 CYP2C60P-201ENST00000566088 139 ntBASIC3.58□□□□□ -1.84
FOXA1P55317 SS18L2P2-201ENST00000583960 235 ntBASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms