Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 GTF2IP23-201ENST00000423746 351 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 DYNLL1P7-201ENST00000429273 258 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 MTCO1P3-201ENST00000429327 192 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AC060234.3-201ENST00000430438 559 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXA1P49639 LINC02476-202ENST00000431071 559 ntTSL 4 BASIC4.09□□□□□ -1.75
HOXA1P49639 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC092393.1-201ENST00000439625 742 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 RPL12P11-201ENST00000439970 501 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AC092809.1-201ENST00000441469 474 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 RPS7P5-201ENST00000441482 581 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC104978.1-201ENST00000449387 391 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC022431.1-201ENST00000450941 438 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 YWHAEP1-201ENST00000453697 763 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 RN7SL443P-201ENST00000464331 290 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC106872.2-201ENST00000494303 480 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AC104971.1-201ENST00000495117 578 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 OR5H4P-201ENST00000510851 923 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AC109471.1-201ENST00000511631 612 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 RNU6-1129P-201ENST00000515964 104 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 LY96-202ENST00000518893 430 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA1P49639 IGKV2-36-201ENST00000519999 223 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA1P49639 ERP27-202ENST00000540097 993 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA1P49639 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA1P49639 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 AL352979.3-201ENST00000553515 247 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AC090751.1-201ENST00000566966 267 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC022662.1-201ENST00000580252 331 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AC040904.1-201ENST00000590850 223 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXA1P49639 AL022161.1-201ENST00000604390 213 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AC005392.3-201ENST00000607109 459 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC099676.1-201ENST00000608886 657 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 AL354821.1-201ENST00000617598 809 ntTSL 3 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA1P49639 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA1P49639 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 CYP4F35P-202ENST00000636121 390 ntBASIC4.09□□□□□ -1.75
HOXA1P49639 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC4.09□□□□□ -1.75
HOXA1P49639 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.09□□□□□ -1.75
HOXA1P49639 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.09□□□□□ -1.75
HOXA1P49639 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 TRIQK-201ENST00000378861 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
HOXA1P49639 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.09□□□□□ -1.76
HOXA1P49639 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.76
HOXA1P49639 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA1P49639 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA1P49639 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA1P49639 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA1P49639 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA1P49639 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA1P49639 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC4.09□□□□□ -1.76
HOXA1P49639 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXA1P49639 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 FOXP2-220ENST00000634411 4065 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXA1P49639 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
HOXA1P49639 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 FAM3C2-201ENST00000312214 681 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 RNA5SP339-201ENST00000390987 122 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA1P49639 RSL24D1P4-201ENST00000400938 484 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 GSTA8P-201ENST00000404253 637 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 RPL7P53-201ENST00000421245 739 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXA1P49639 PSMD10P3-201ENST00000437000 448 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 AL031663.1-201ENST00000437445 219 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXA1P49639 AC234781.3-201ENST00000452540 973 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 BX248409.1-201ENST00000455497 255 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 AL133477.1-201ENST00000457472 514 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXA1P49639 RPL23AP12-201ENST00000467573 473 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXA1P49639 PPIAP19-201ENST00000486414 492 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 DYNLL1P6-201ENST00000503440 264 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 AL592156.1-201ENST00000508758 304 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXA1P49639 AC093755.1-201ENST00000512950 1023 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 MTCO3P28-201ENST00000513351 515 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 MRPS33P3-201ENST00000513456 322 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 ENPP7P9-201ENST00000514456 627 ntBASIC4.08□□□□□ -1.76
HOXA1P49639 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 96.7 ms