Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 RNU6-501P-201ENST00000364072 100 ntBASIC5.19□□□□□ -1.58
MSX2P35548 RNU6-619P-201ENST00000365146 108 ntBASIC5.19□□□□□ -1.58
MSX2P35548 RNA5SP30-201ENST00000365552 115 ntBASIC5.19□□□□□ -1.58
MSX2P35548 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.19□□□□□ -1.58
MSX2P35548 MIR323B-201ENST00000385269 82 ntBASIC5.19□□□□□ -1.58
MSX2P35548 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.19□□□□□ -1.58
MSX2P35548 RPL21P67-201ENST00000402896 478 ntBASIC5.19□□□□□ -1.58
MSX2P35548 CIR1P3-201ENST00000405137 479 ntBASIC5.19□□□□□ -1.58
MSX2P35548 AL139098.1-201ENST00000407291 389 ntBASIC5.19□□□□□ -1.58
MSX2P35548 MIR1277-201ENST00000408536 78 ntBASIC5.19□□□□□ -1.58
MSX2P35548 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC5.19□□□□□ -1.58
MSX2P35548 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.19□□□□□ -1.58
MSX2P35548 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX2P35548 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX2P35548 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC5.19□□□□□ -1.58
MSX2P35548 AC099782.1-201ENST00000425889 474 ntBASIC5.19□□□□□ -1.58
MSX2P35548 HSPD1P12-201ENST00000429127 1069 ntBASIC5.19□□□□□ -1.58
MSX2P35548 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX2P35548 RAET1E-AS1-201ENST00000446954 491 ntTSL 2 BASIC5.19□□□□□ -1.58
MSX2P35548 RPL7AP52-201ENST00000458096 790 ntBASIC5.19□□□□□ -1.58
MSX2P35548 KLF3P2-201ENST00000465138 268 ntBASIC5.19□□□□□ -1.58
MSX2P35548 COX6B1P2-201ENST00000489624 230 ntBASIC5.19□□□□□ -1.58
MSX2P35548 AL049874.2-201ENST00000492636 288 ntBASIC5.19□□□□□ -1.58
MSX2P35548 SETP14-201ENST00000497538 873 ntBASIC5.19□□□□□ -1.58
MSX2P35548 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX2P35548 AC022483.1-201ENST00000514020 567 ntBASIC5.19□□□□□ -1.58
MSX2P35548 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC5.19□□□□□ -1.58
MSX2P35548 EIF3KP3-201ENST00000514461 639 ntBASIC5.19□□□□□ -1.58
MSX2P35548 IGKV3D-25-201ENST00000519599 235 ntBASIC5.19□□□□□ -1.58
MSX2P35548 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX2P35548 WBP1LP3-201ENST00000523033 208 ntBASIC5.19□□□□□ -1.58
MSX2P35548 AC027804.1-201ENST00000534653 529 ntTSL 2 BASIC5.19□□□□□ -1.58
MSX2P35548 KLRC2-204ENST00000536833 771 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX2P35548 AC007569.1-202ENST00000547282 303 ntTSL 3 BASIC5.19□□□□□ -1.58
MSX2P35548 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.19□□□□□ -1.58
MSX2P35548 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC5.19□□□□□ -1.58
MSX2P35548 DISC1FP1-201ENST00000561596 545 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX2P35548 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.19□□□□□ -1.58
MSX2P35548 EIF5A2P1-201ENST00000564027 460 ntBASIC5.19□□□□□ -1.58
MSX2P35548 RN7SL230P-201ENST00000580835 303 ntBASIC5.19□□□□□ -1.58
MSX2P35548 MIR548Y-201ENST00000582739 110 ntBASIC5.19□□□□□ -1.58
MSX2P35548 MIR4260-201ENST00000583107 67 ntBASIC5.19□□□□□ -1.58
MSX2P35548 SEPT7P9-203ENST00000604116 343 ntBASIC5.19□□□□□ -1.58
MSX2P35548 AL122125.1-201ENST00000616999 600 ntBASIC5.19□□□□□ -1.58
MSX2P35548 AC007742.2-201ENST00000618226 398 ntBASIC5.19□□□□□ -1.58
MSX2P35548 uc_338.7-201ENST00000621834 124 ntBASIC5.19□□□□□ -1.58
MSX2P35548 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC5.19□□□□□ -1.58
MSX2P35548 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.19□□□□□ -1.58
MSX2P35548 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
MSX2P35548 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
MSX2P35548 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.19□□□□□ -1.58
MSX2P35548 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
MSX2P35548 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC5.19□□□□□ -1.58
MSX2P35548 MNDA-201ENST00000368141 1752 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
MSX2P35548 KIAA0586-203ENST00000423743 5339 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
MSX2P35548 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
MSX2P35548 LTN1-202ENST00000389194 7749 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
MSX2P35548 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 AL590763.1-201ENST00000398297 1545 ntBASIC5.18□□□□□ -1.58
MSX2P35548 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 ITGB1-201ENST00000302278 3640 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 STARD6-201ENST00000307844 663 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 RNU4-12P-201ENST00000365233 139 ntBASIC5.18□□□□□ -1.58
MSX2P35548 RNU5A-6P-201ENST00000384136 116 ntBASIC5.18□□□□□ -1.58
MSX2P35548 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
MSX2P35548 FGF7P8-201ENST00000402994 292 ntBASIC5.18□□□□□ -1.58
MSX2P35548 GCNT1P4-201ENST00000404096 329 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC5.18□□□□□ -1.58
MSX2P35548 FGF12-AS1-201ENST00000414920 580 ntTSL 4 BASIC5.18□□□□□ -1.58
MSX2P35548 AC092647.1-201ENST00000420654 287 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC5.18□□□□□ -1.58
MSX2P35548 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX2P35548 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
MSX2P35548 UBE2FP3-201ENST00000436366 524 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AP000542.1-201ENST00000448473 371 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AC104306.1-201ENST00000449702 371 ntBASIC5.18□□□□□ -1.58
MSX2P35548 NPM1P39-201ENST00000449818 867 ntBASIC5.18□□□□□ -1.58
MSX2P35548 HMGB1P7-201ENST00000450921 612 ntBASIC5.18□□□□□ -1.58
MSX2P35548 BX248409.1-201ENST00000455497 255 ntBASIC5.18□□□□□ -1.58
MSX2P35548 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 RPL7P38-201ENST00000488396 739 ntBASIC5.18□□□□□ -1.58
MSX2P35548 RN7SL193P-201ENST00000491708 276 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AC106822.1-201ENST00000502647 526 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AC108941.1-201ENST00000502853 530 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AC113367.2-201ENST00000505749 160 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX2P35548 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX2P35548 snoU109.6-201ENST00000516831 118 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC5.18□□□□□ -1.58
MSX2P35548 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 AC118942.1-202ENST00000529081 578 ntTSL 5 BASIC5.18□□□□□ -1.58
MSX2P35548 AC104383.1-201ENST00000530297 370 ntBASIC5.18□□□□□ -1.58
MSX2P35548 AP002453.2-201ENST00000533503 320 ntBASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms