Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC131281.1-201ENST00000522984 164 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 MAL2-208ENST00000523307 556 ntTSL 4 BASIC5.93□□□□□ -1.46
COL8A1P27658 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC5.93□□□□□ -1.46
COL8A1P27658 AC123904.2-201ENST00000548059 300 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 BICD1-206ENST00000551086 423 ntTSL 3 BASIC5.93□□□□□ -1.46
COL8A1P27658 AC068831.6-201ENST00000560522 795 ntTSL 3 BASIC5.93□□□□□ -1.46
COL8A1P27658 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 AC005546.1-201ENST00000591837 391 ntTSL 3 BASIC5.93□□□□□ -1.46
COL8A1P27658 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC5.93□□□□□ -1.46
COL8A1P27658 AC010201.1-201ENST00000605051 540 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 AC114477.1-201ENST00000605097 605 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 MIR6826-201ENST00000617808 98 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC5.93□□□□□ -1.46
COL8A1P27658 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC5.93□□□□□ -1.46
COL8A1P27658 AC091953.2-201ENST00000623979 160 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 MAGT1-201ENST00000358075 4047 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC5.93□□□□□ -1.46
COL8A1P27658 ALB-203ENST00000415165 1483 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 GJA10-203ENST00000638915 1479 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
COL8A1P27658 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
COL8A1P27658 TDP1-213ENST00000555880 1894 ntTSL 5 BASIC5.93□□□□□ -1.46
COL8A1P27658 BEST3-205ENST00000488961 2878 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 LIMA1-202ENST00000394943 3669 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 MYO6-208ENST00000627432 4074 ntTSL 5 BASIC5.93□□□□□ -1.46
COL8A1P27658 AC007406.5-201ENST00000570140 3170 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC5.93□□□□□ -1.46
COL8A1P27658 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 BCO2-203ENST00000438022 2598 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 CYP4A22-206ENST00000619754 2351 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 QTRT2-212ENST00000485050 3844 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 CBR4-201ENST00000306193 3443 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
COL8A1P27658 KPNA2P1-201ENST00000458289 1591 ntBASIC5.93□□□□□ -1.46
COL8A1P27658 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
COL8A1P27658 FBXW7-201ENST00000263981 3743 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 SCIN-209ENST00000519209 2660 ntTSL 2 BASIC5.92□□□□□ -1.46
COL8A1P27658 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.92□□□□□ -1.46
COL8A1P27658 SEPT14-201ENST00000388975 3785 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
COL8A1P27658 CCDC129-203ENST00000409210 3773 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
COL8A1P27658 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
COL8A1P27658 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 GRIK1-202ENST00000389124 2712 ntTSL 5 BASIC5.92□□□□□ -1.46
COL8A1P27658 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC5.92□□□□□ -1.46
COL8A1P27658 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.92□□□□□ -1.46
COL8A1P27658 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 PLCZ1-201ENST00000266505 2148 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 VN1R1-201ENST00000321039 2353 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
COL8A1P27658 MARK2P4-201ENST00000503381 2380 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 PPIAP24-201ENST00000328558 471 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 ALKAL2-201ENST00000344414 449 ntTSL 3 BASIC5.92□□□□□ -1.46
COL8A1P27658 Y_RNA.29-201ENST00000362570 113 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 Y_RNA.477-201ENST00000384352 108 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 MT-TW-201ENST00000387382 68 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
COL8A1P27658 NDUFS5P1-201ENST00000405668 289 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC5.92□□□□□ -1.46
COL8A1P27658 RAC1P4-201ENST00000419413 579 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.92□□□□□ -1.46
COL8A1P27658 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.92□□□□□ -1.46
COL8A1P27658 UQCRHP1-204ENST00000424609 274 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 AC007283.2-201ENST00000424739 197 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 SDHCP3-201ENST00000445371 506 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 AC097463.1-201ENST00000447288 481 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 MTND1P17-201ENST00000448961 204 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 PSPC1P2-201ENST00000455130 225 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 AC068228.1-201ENST00000461723 211 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 TRBV8-2-201ENST00000475637 270 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC5.92□□□□□ -1.46
COL8A1P27658 FO393415.2-201ENST00000480085 343 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 AC111193.1-201ENST00000504097 155 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 HSPD1P15-201ENST00000505573 1122 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.92□□□□□ -1.46
COL8A1P27658 SNX18P23-201ENST00000510867 677 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 AC126768.1-201ENST00000511698 490 ntTSL 3 BASIC5.92□□□□□ -1.46
COL8A1P27658 AC067942.3-201ENST00000512025 362 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 AC093689.1-201ENST00000514737 246 ntTSL 5 BASIC5.92□□□□□ -1.46
COL8A1P27658 RNU4ATAC7P-201ENST00000516280 125 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 RNA5SP318-201ENST00000516352 92 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 RPL10P18-201ENST00000519384 309 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 SNRPCP6-201ENST00000528310 210 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 LINC02392-201ENST00000548172 537 ntTSL 4 BASIC5.92□□□□□ -1.46
COL8A1P27658 NPIPB1P-202ENST00000588786 828 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 AL590032.1-201ENST00000604920 252 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 SNORD96A-201ENST00000606577 79 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 EIF3FP1-201ENST00000613970 806 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 AC092608.2-201ENST00000624427 218 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 MPP6-209ENST00000625307 126 ntTSL 5 BASIC5.92□□□□□ -1.46
COL8A1P27658 AC092111.1-201ENST00000618256 3358 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 ZNF806-201ENST00000438300 1774 ntBASIC5.92□□□□□ -1.46
COL8A1P27658 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC5.92□□□□□ -1.46
COL8A1P27658 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC5.92□□□□□ -1.46
COL8A1P27658 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.92□□□□□ -1.46
COL8A1P27658 ARCN1-201ENST00000264028 3845 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 SRFBP1-201ENST00000339397 2855 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
COL8A1P27658 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC5.92□□□□□ -1.46
COL8A1P27658 CNTN4-AS1-201ENST00000442749 1640 ntTSL 3 BASIC5.92□□□□□ -1.46
COL8A1P27658 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms