Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.62□□□□□ -1.83
USF1P22415 SNORA84-201ENST00000459229 133 ntBASIC3.62□□□□□ -1.83
USF1P22415 AC010683.1-201ENST00000473673 378 ntBASIC3.62□□□□□ -1.83
USF1P22415 RPS27AP13-201ENST00000498403 237 ntBASIC3.62□□□□□ -1.83
USF1P22415 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC3.62□□□□□ -1.83
USF1P22415 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
USF1P22415 AL592156.1-201ENST00000508758 304 ntBASIC3.62□□□□□ -1.83
USF1P22415 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC3.62□□□□□ -1.83
USF1P22415 PPBPP1-201ENST00000510807 373 ntBASIC3.62□□□□□ -1.83
USF1P22415 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC3.62□□□□□ -1.83
USF1P22415 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC3.62□□□□□ -1.83
USF1P22415 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC3.62□□□□□ -1.83
USF1P22415 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC3.62□□□□□ -1.83
USF1P22415 BNIP3P22-201ENST00000593399 556 ntBASIC3.62□□□□□ -1.83
USF1P22415 AC055764.2-201ENST00000610089 670 ntBASIC3.62□□□□□ -1.83
USF1P22415 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.62□□□□□ -1.83
USF1P22415 AL021997.2-201ENST00000615674 271 ntBASIC3.62□□□□□ -1.83
USF1P22415 AL138721.1-201ENST00000616756 179 ntBASIC3.62□□□□□ -1.83
USF1P22415 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.62□□□□□ -1.83
USF1P22415 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC3.62□□□□□ -1.83
USF1P22415 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC3.62□□□□□ -1.83
USF1P22415 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC3.62□□□□□ -1.83
USF1P22415 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
USF1P22415 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.62□□□□□ -1.83
USF1P22415 ECT2-204ENST00000392692 4158 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
USF1P22415 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
USF1P22415 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USF1P22415 PNPT1P2-201ENST00000456768 2050 ntBASIC3.61□□□□□ -1.83
USF1P22415 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC3.61□□□□□ -1.83
USF1P22415 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USF1P22415 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC3.61□□□□□ -1.83
USF1P22415 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USF1P22415 RNA5SP513-201ENST00000364648 118 ntBASIC3.61□□□□□ -1.83
USF1P22415 RNA5SP151-201ENST00000365632 117 ntBASIC3.61□□□□□ -1.83
USF1P22415 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC3.61□□□□□ -1.83
USF1P22415 RPL32P23-201ENST00000397237 405 ntBASIC3.61□□□□□ -1.83
USF1P22415 SF3B1-202ENST00000409915 600 ntTSL 2 BASIC3.61□□□□□ -1.83
USF1P22415 RN7SKP202-201ENST00000410439 330 ntBASIC3.61□□□□□ -1.83
USF1P22415 RNA5SP104-201ENST00000410989 118 ntBASIC3.61□□□□□ -1.83
USF1P22415 SNORA74C-2-201ENST00000411179 201 ntBASIC3.61□□□□□ -1.83
USF1P22415 RBMS3-AS1-201ENST00000414547 554 ntTSL 4 BASIC3.61□□□□□ -1.83
USF1P22415 AC244453.4-201ENST00000419150 388 ntBASIC3.61□□□□□ -1.83
USF1P22415 EIF1P3-201ENST00000423841 334 ntBASIC3.61□□□□□ -1.83
USF1P22415 RPL7P2-201ENST00000427639 268 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC073335.1-201ENST00000427776 363 ntBASIC3.61□□□□□ -1.83
USF1P22415 AL117339.2-201ENST00000430475 180 ntBASIC3.61□□□□□ -1.83
USF1P22415 FTH1P6-201ENST00000430768 320 ntBASIC3.61□□□□□ -1.83
USF1P22415 MRPL50P1-201ENST00000431951 384 ntBASIC3.61□□□□□ -1.83
USF1P22415 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC3.61□□□□□ -1.83
USF1P22415 UBE2V1P3-201ENST00000439651 417 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC006326.1-201ENST00000445465 787 ntBASIC3.61□□□□□ -1.83
USF1P22415 S100A11P1-201ENST00000477525 312 ntBASIC3.61□□□□□ -1.83
USF1P22415 RN7SL691P-201ENST00000494487 301 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC025445.1-201ENST00000502728 300 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC020593.1-201ENST00000507399 299 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC093770.1-201ENST00000511559 571 ntBASIC3.61□□□□□ -1.83
USF1P22415 SAP18P1-201ENST00000512058 390 ntBASIC3.61□□□□□ -1.83
USF1P22415 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC3.61□□□□□ -1.83
USF1P22415 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC3.61□□□□□ -1.83
USF1P22415 AC008694.2-201ENST00000517591 306 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.61□□□□□ -1.83
USF1P22415 MTCO1P49-201ENST00000523429 802 ntBASIC3.61□□□□□ -1.83
USF1P22415 AP001992.1-204ENST00000525104 687 ntTSL 3 BASIC3.61□□□□□ -1.83
USF1P22415 OR5BC1P-201ENST00000529327 739 ntBASIC3.61□□□□□ -1.83
USF1P22415 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC3.61□□□□□ -1.83
USF1P22415 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC3.61□□□□□ -1.83
USF1P22415 CBX3P5-201ENST00000552017 521 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC3.61□□□□□ -1.83
USF1P22415 AL049870.4-201ENST00000555741 486 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.61□□□□□ -1.83
USF1P22415 MIR4286-201ENST00000580651 93 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC138207.6-203ENST00000581652 565 ntTSL 4 BASIC3.61□□□□□ -1.83
USF1P22415 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC3.61□□□□□ -1.83
USF1P22415 AC022916.3-201ENST00000592961 742 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC010201.1-201ENST00000605051 540 ntBASIC3.61□□□□□ -1.83
USF1P22415 AL096803.3-201ENST00000609032 532 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC098617.1-203ENST00000609865 277 ntTSL 5 BASIC3.61□□□□□ -1.83
USF1P22415 FAM27D1-201ENST00000612308 341 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC013727.1-201ENST00000618581 839 ntTSL 5 BASIC3.61□□□□□ -1.83
USF1P22415 AC007546.2-201ENST00000623996 360 ntBASIC3.61□□□□□ -1.83
USF1P22415 AC116563.2-201ENST00000624751 535 ntBASIC3.61□□□□□ -1.83
USF1P22415 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
USF1P22415 AL122126.1-201ENST00000546905 1318 ntBASIC3.61□□□□□ -1.83
USF1P22415 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC3.61□□□□□ -1.83
USF1P22415 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
USF1P22415 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.61□□□□□ -1.83
USF1P22415 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.61□□□□□ -1.83
USF1P22415 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.6□□□□□ -1.83
USF1P22415 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USF1P22415 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
USF1P22415 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
USF1P22415 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC3.6□□□□□ -1.83
USF1P22415 DTWD1-201ENST00000251250 13776 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
USF1P22415 ZC3H11A-214ENST00000639812 11825 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
USF1P22415 MIR372-201ENST00000362225 67 ntBASIC3.6□□□□□ -1.83
USF1P22415 RNA5SP52-201ENST00000362448 134 ntBASIC3.6□□□□□ -1.83
USF1P22415 RN7SKP44-201ENST00000363602 316 ntBASIC3.6□□□□□ -1.83
USF1P22415 RNA5SP283-201ENST00000365604 119 ntBASIC3.6□□□□□ -1.83
USF1P22415 RNU6-185P-201ENST00000384421 107 ntBASIC3.6□□□□□ -1.83
USF1P22415 MTND4P11-201ENST00000417020 1058 ntBASIC3.6□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 123.6 ms