Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 HCFC2P1-201ENST00000392864 1592 ntBASIC4.6□□□□□ -1.67
BRCA1P38398 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
BRCA1P38398 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
BRCA1P38398 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.6□□□□□ -1.67
BRCA1P38398 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.59□□□□□ -1.67
BRCA1P38398 AL138820.1-201ENST00000617901 5305 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 EFR3A-208ENST00000637848 2547 ntTSL 5 BASIC4.59□□□□□ -1.67
BRCA1P38398 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
BRCA1P38398 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
BRCA1P38398 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
BRCA1P38398 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.59□□□□□ -1.67
BRCA1P38398 USP8P1-201ENST00000494673 3183 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC4.59□□□□□ -1.67
BRCA1P38398 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC4.59□□□□□ -1.67
BRCA1P38398 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
BRCA1P38398 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
BRCA1P38398 AC020633.1-201ENST00000468439 2247 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
BRCA1P38398 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC4.59□□□□□ -1.67
BRCA1P38398 AC096644.3-201ENST00000416788 338 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 MTND6P5-201ENST00000448266 512 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 AC025554.1-201ENST00000505641 188 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 BTG4P1-201ENST00000510421 183 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 RAC1P2-201ENST00000511164 579 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 PHBP14-201ENST00000512887 367 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC4.59□□□□□ -1.67
BRCA1P38398 EIF4BP1-201ENST00000554881 351 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 SLC25A36P1-201ENST00000590111 465 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 YPEL5P2-201ENST00000605553 359 ntBASIC4.59□□□□□ -1.67
BRCA1P38398 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.59□□□□□ -1.67
BRCA1P38398 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.59□□□□□ -1.67
BRCA1P38398 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC4.59□□□□□ -1.67
BRCA1P38398 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
BRCA1P38398 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
BRCA1P38398 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.68
BRCA1P38398 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.59□□□□□ -1.68
BRCA1P38398 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.59□□□□□ -1.68
BRCA1P38398 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
BRCA1P38398 SMC1B-201ENST00000357450 4201 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
BRCA1P38398 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.58□□□□□ -1.68
BRCA1P38398 RBMY2UP-201ENST00000453474 324 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC4.58□□□□□ -1.68
BRCA1P38398 ARL4AP1-201ENST00000503220 705 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC4.58□□□□□ -1.68
BRCA1P38398 FTH1P9-201ENST00000513251 355 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.58□□□□□ -1.68
BRCA1P38398 LINC02565-201ENST00000592678 478 ntTSL 2 BASIC4.58□□□□□ -1.68
BRCA1P38398 AC120349.1-201ENST00000599498 282 ntTSL 5 BASIC4.58□□□□□ -1.68
BRCA1P38398 Z95327.2-201ENST00000414579 1873 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 ORC4-216ENST00000540442 6472 ntTSL 2 BASIC4.58□□□□□ -1.68
BRCA1P38398 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
BRCA1P38398 CACNA1E-210ENST00000621791 16171 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
BRCA1P38398 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
BRCA1P38398 KCNJ16-211ENST00000615244 4190 ntAPPRIS P1 TSL 4 BASIC4.58□□□□□ -1.68
BRCA1P38398 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
BRCA1P38398 HEATR1-203ENST00000366582 8447 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
BRCA1P38398 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.58□□□□□ -1.68
BRCA1P38398 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.58□□□□□ -1.68
BRCA1P38398 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC4.58□□□□□ -1.68
BRCA1P38398 AC010740.1-201ENST00000417035 684 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.58□□□□□ -1.68
BRCA1P38398 LMO7DN-IT1-201ENST00000436872 321 ntTSL 3 BASIC4.58□□□□□ -1.68
BRCA1P38398 LINC01773-201ENST00000437598 787 ntTSL 2 BASIC4.58□□□□□ -1.68
BRCA1P38398 SNORA71B-202ENST00000439232 272 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
BRCA1P38398 AL671855.1-201ENST00000446875 1203 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 OR52Y1P-201ENST00000452418 828 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 SNORD105B-201ENST00000458770 79 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 AC037198.2-201ENST00000478845 733 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 SUMO2P4-201ENST00000504193 276 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 AC018752.1-201ENST00000507813 206 ntTSL 5 BASIC4.58□□□□□ -1.68
BRCA1P38398 RNU2-27P-201ENST00000516185 142 ntBASIC4.58□□□□□ -1.68
BRCA1P38398 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC4.58□□□□□ -1.68
BRCA1P38398 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC4.58□□□□□ -1.68
BRCA1P38398 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
BRCA1P38398 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
BRCA1P38398 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
BRCA1P38398 TET2-204ENST00000413648 4973 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
BRCA1P38398 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
BRCA1P38398 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
BRCA1P38398 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.57□□□□□ -1.68
BRCA1P38398 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
BRCA1P38398 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
BRCA1P38398 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.57□□□□□ -1.68
BRCA1P38398 UBA52P6-201ENST00000399822 382 ntBASIC4.57□□□□□ -1.68
BRCA1P38398 AJ239321.1-201ENST00000424255 564 ntBASIC4.57□□□□□ -1.68
BRCA1P38398 AC244033.1-201ENST00000426826 870 ntBASIC4.57□□□□□ -1.68
BRCA1P38398 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.57□□□□□ -1.68
BRCA1P38398 RNA5SP208-201ENST00000516156 78 ntBASIC4.57□□□□□ -1.68
BRCA1P38398 AC100770.1-201ENST00000532310 322 ntBASIC4.57□□□□□ -1.68
BRCA1P38398 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC4.57□□□□□ -1.68
BRCA1P38398 MTCO3P22-201ENST00000603219 784 ntBASIC4.57□□□□□ -1.68
BRCA1P38398 AL353600.1-201ENST00000608148 251 ntBASIC4.57□□□□□ -1.68
BRCA1P38398 AC097505.1-201ENST00000610199 565 ntBASIC4.57□□□□□ -1.68
BRCA1P38398 CASP1-210ENST00000528974 1402 ntTSL 2 BASIC4.57□□□□□ -1.68
BRCA1P38398 MPDZ-219ENST00000546205 6342 ntAPPRIS ALT2 TSL 5 BASIC4.57□□□□□ -1.68
BRCA1P38398 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.57□□□□□ -1.68
BRCA1P38398 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
BRCA1P38398 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.57□□□□□ -1.68
BRCA1P38398 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms