Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC011374.2-201ENST00000607135 526 ntBASIC3.95□□□□□ -1.78
SDC1P18827 AL158211.2-201ENST00000607282 395 ntBASIC3.95□□□□□ -1.78
SDC1P18827 AC019193.2-201ENST00000610012 634 ntBASIC3.95□□□□□ -1.78
SDC1P18827 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC3.95□□□□□ -1.78
SDC1P18827 MIR7973-1-201ENST00000614683 76 ntBASIC3.95□□□□□ -1.78
SDC1P18827 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC3.95□□□□□ -1.78
SDC1P18827 AC233309.1-201ENST00000619522 751 ntBASIC3.95□□□□□ -1.78
SDC1P18827 CFTRP2-201ENST00000634304 199 ntBASIC3.95□□□□□ -1.78
SDC1P18827 IQCH-206ENST00000546225 3112 ntTSL 5 BASIC3.95□□□□□ -1.78
SDC1P18827 OR52E4-202ENST00000641726 2947 ntAPPRIS P1 BASIC3.95□□□□□ -1.78
SDC1P18827 UBE4A-201ENST00000252108 6103 ntAPPRIS ALT1 TSL 1 (best) BASIC3.95□□□□□ -1.78
SDC1P18827 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC3.95□□□□□ -1.78
SDC1P18827 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.95□□□□□ -1.78
SDC1P18827 AL445437.1-201ENST00000623157 3087 ntBASIC3.95□□□□□ -1.78
SDC1P18827 ANKRD20A10P-201ENST00000457591 1515 ntBASIC3.95□□□□□ -1.78
SDC1P18827 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC3.95□□□□□ -1.78
SDC1P18827 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC3.95□□□□□ -1.78
SDC1P18827 AC018529.3-201ENST00000624212 2254 ntBASIC3.95□□□□□ -1.78
SDC1P18827 AL157396.1-201ENST00000630034 8444 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
SDC1P18827 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC3.95□□□□□ -1.78
SDC1P18827 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
SDC1P18827 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
SDC1P18827 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC3.94□□□□□ -1.78
SDC1P18827 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.94□□□□□ -1.78
SDC1P18827 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
SDC1P18827 AP000756.2-201ENST00000624168 2567 ntBASIC3.94□□□□□ -1.78
SDC1P18827 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.94□□□□□ -1.78
SDC1P18827 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC3.94□□□□□ -1.78
SDC1P18827 MTND5P11-201ENST00000511037 1812 ntBASIC3.94□□□□□ -1.78
SDC1P18827 RNA5-8SP7-201ENST00000363443 155 ntBASIC3.94□□□□□ -1.78
SDC1P18827 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC3.94□□□□□ -1.78
SDC1P18827 RNU4-27P-201ENST00000410889 139 ntBASIC3.94□□□□□ -1.78
SDC1P18827 AC013404.1-201ENST00000413068 249 ntBASIC3.94□□□□□ -1.78
SDC1P18827 MTND4P11-201ENST00000417020 1058 ntBASIC3.94□□□□□ -1.78
SDC1P18827 GAPDHP49-201ENST00000421421 961 ntBASIC3.94□□□□□ -1.78
SDC1P18827 PNRC2P1-201ENST00000423940 420 ntBASIC3.94□□□□□ -1.78
SDC1P18827 RPS26P47-201ENST00000427219 348 ntBASIC3.94□□□□□ -1.78
SDC1P18827 MTCO1P54-201ENST00000430139 712 ntBASIC3.94□□□□□ -1.78
SDC1P18827 AL353597.2-202ENST00000434901 373 ntBASIC3.94□□□□□ -1.78
SDC1P18827 GSTA7P-201ENST00000438425 448 ntBASIC3.94□□□□□ -1.78
SDC1P18827 TPTE2P3-201ENST00000441562 1189 ntBASIC3.94□□□□□ -1.78
SDC1P18827 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC3.94□□□□□ -1.78
SDC1P18827 AC097499.1-201ENST00000444277 208 ntBASIC3.94□□□□□ -1.78
SDC1P18827 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC3.94□□□□□ -1.78
SDC1P18827 AC104306.1-201ENST00000449702 371 ntBASIC3.94□□□□□ -1.78
SDC1P18827 RPL23AP12-201ENST00000467573 473 ntBASIC3.94□□□□□ -1.78
SDC1P18827 AC078857.1-201ENST00000469870 667 ntBASIC3.94□□□□□ -1.78
SDC1P18827 RPL23AP2-201ENST00000471227 466 ntBASIC3.94□□□□□ -1.78
SDC1P18827 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC3.94□□□□□ -1.78
SDC1P18827 LINC01017-201ENST00000508823 768 ntTSL 3 BASIC3.94□□□□□ -1.78
SDC1P18827 AC133963.2-201ENST00000513686 578 ntBASIC3.94□□□□□ -1.78
SDC1P18827 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
SDC1P18827 AL451137.1-201ENST00000523363 443 ntTSL 3 BASIC3.94□□□□□ -1.78
SDC1P18827 FAXC-204ENST00000538471 941 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
SDC1P18827 PDCD5P1-201ENST00000543528 309 ntBASIC3.94□□□□□ -1.78
SDC1P18827 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SDC1P18827 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC3.94□□□□□ -1.78
SDC1P18827 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC3.94□□□□□ -1.78
SDC1P18827 AC079171.1-201ENST00000568788 914 ntBASIC3.94□□□□□ -1.78
SDC1P18827 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC3.94□□□□□ -1.78
SDC1P18827 STARD13-AS-208ENST00000589472 859 ntTSL 5 BASIC3.94□□□□□ -1.78
SDC1P18827 AC234771.5-201ENST00000600161 514 ntBASIC3.94□□□□□ -1.78
SDC1P18827 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC3.94□□□□□ -1.78
SDC1P18827 AC139769.3-201ENST00000618383 175 ntBASIC3.94□□□□□ -1.78
SDC1P18827 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.94□□□□□ -1.78
SDC1P18827 RMST_9.1-201ENST00000619945 193 ntBASIC3.94□□□□□ -1.78
SDC1P18827 AC015726.3-201ENST00000624501 418 ntBASIC3.94□□□□□ -1.78
SDC1P18827 AC087521.4-201ENST00000637427 289 ntTSL 5 BASIC3.94□□□□□ -1.78
SDC1P18827 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC3.94□□□□□ -1.78
SDC1P18827 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SDC1P18827 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.94□□□□□ -1.78
SDC1P18827 MPDZ-215ENST00000541718 7603 ntAPPRIS P3 TSL 1 (best) BASIC3.93□□□□□ -1.78
SDC1P18827 DMD-207ENST00000378677 13932 ntAPPRIS ALT2 TSL 5 BASIC3.93□□□□□ -1.78
SDC1P18827 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC3.93□□□□□ -1.78
SDC1P18827 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SDC1P18827 AC139713.2-214ENST00000642059 1811 ntBASIC3.93□□□□□ -1.78
SDC1P18827 AL451142.2-201ENST00000429076 2090 ntBASIC3.93□□□□□ -1.78
SDC1P18827 IGKV7-3-201ENST00000357453 298 ntBASIC3.93□□□□□ -1.78
SDC1P18827 IL20-201ENST00000367096 925 ntAPPRIS P1 TSL 1 (best) BASIC3.93□□□□□ -1.78
SDC1P18827 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.93□□□□□ -1.78
SDC1P18827 AC019155.1-201ENST00000382242 574 ntBASIC3.93□□□□□ -1.78
SDC1P18827 MIR142-201ENST00000384835 87 ntBASIC3.93□□□□□ -1.78
SDC1P18827 HMGB1P13-201ENST00000406019 642 ntBASIC3.93□□□□□ -1.78
SDC1P18827 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC3.93□□□□□ -1.78
SDC1P18827 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC3.93□□□□□ -1.78
SDC1P18827 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC3.93□□□□□ -1.78
SDC1P18827 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SDC1P18827 VN1R42P-201ENST00000424651 344 ntBASIC3.93□□□□□ -1.78
SDC1P18827 AL732292.1-201ENST00000426692 226 ntBASIC3.93□□□□□ -1.78
SDC1P18827 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC3.93□□□□□ -1.78
SDC1P18827 LINC01826-201ENST00000432894 584 ntTSL 4 BASIC3.93□□□□□ -1.78
SDC1P18827 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC3.93□□□□□ -1.78
SDC1P18827 CBX1P1-201ENST00000440184 427 ntBASIC3.93□□□□□ -1.78
SDC1P18827 AC016903.1-201ENST00000444017 588 ntTSL 4 BASIC3.93□□□□□ -1.78
SDC1P18827 LRRC69-202ENST00000448384 1044 ntAPPRIS P1 TSL 5 BASIC3.93□□□□□ -1.78
SDC1P18827 AC009963.2-201ENST00000453431 138 ntBASIC3.93□□□□□ -1.78
SDC1P18827 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC3.93□□□□□ -1.78
SDC1P18827 NDUFA12P1-201ENST00000455914 406 ntBASIC3.93□□□□□ -1.78
SDC1P18827 RNA5SP246-201ENST00000458909 119 ntBASIC3.93□□□□□ -1.78
SDC1P18827 AC117513.1-201ENST00000462792 766 ntTSL 2 BASIC3.93□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms