Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PRELID3BP11-201ENST00000414230 479 ntBASIC5.69□□□□□ -1.5
RNF4P78317 LINC01820-201ENST00000418415 570 ntTSL 2 BASIC5.69□□□□□ -1.5
RNF4P78317 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 TAB2-AS1-201ENST00000424421 730 ntTSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 AKR1B10P1-201ENST00000425765 942 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC5.69□□□□□ -1.5
RNF4P78317 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.69□□□□□ -1.5
RNF4P78317 USP9YP9-201ENST00000429406 715 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC5.69□□□□□ -1.5
RNF4P78317 MTND5P14-201ENST00000441481 1267 ntBASIC5.69□□□□□ -1.5
RNF4P78317 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC5.69□□□□□ -1.5
RNF4P78317 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.69□□□□□ -1.5
RNF4P78317 SBDSP1-204ENST00000453858 737 ntBASIC5.69□□□□□ -1.5
RNF4P78317 LINC00456-201ENST00000453862 692 ntTSL 3 BASIC5.69□□□□□ -1.5
RNF4P78317 AC068228.1-201ENST00000461723 211 ntBASIC5.69□□□□□ -1.5
RNF4P78317 RPL35P6-201ENST00000490024 372 ntBASIC5.69□□□□□ -1.5
RNF4P78317 OR5M14P-201ENST00000506803 618 ntBASIC5.69□□□□□ -1.5
RNF4P78317 LINC02229-201ENST00000508486 661 ntTSL 3 BASIC5.69□□□□□ -1.5
RNF4P78317 PRMT5P1-201ENST00000514351 598 ntBASIC5.69□□□□□ -1.5
RNF4P78317 RNU6-488P-201ENST00000515918 99 ntBASIC5.69□□□□□ -1.5
RNF4P78317 IGKV3D-25-201ENST00000519599 235 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC5.69□□□□□ -1.5
RNF4P78317 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 CENPUP1-201ENST00000526649 1202 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.69□□□□□ -1.5
RNF4P78317 OR4H6P-201ENST00000563771 921 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC5.69□□□□□ -1.5
RNF4P78317 AC107954.1-201ENST00000565906 727 ntBASIC5.69□□□□□ -1.5
RNF4P78317 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.69□□□□□ -1.5
RNF4P78317 AC011840.5-201ENST00000582125 771 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AC012507.3-201ENST00000603556 477 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AL499605.1-201ENST00000604628 403 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AC141002.1-201ENST00000607025 279 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AC092266.1-201ENST00000610958 165 ntBASIC5.69□□□□□ -1.5
RNF4P78317 MIR6071-201ENST00000616741 78 ntBASIC5.69□□□□□ -1.5
RNF4P78317 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC5.69□□□□□ -1.5
RNF4P78317 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 LNX2-201ENST00000316334 4627 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC5.69□□□□□ -1.5
RNF4P78317 PLRG1-202ENST00000499023 3351 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 SLC2A14-221ENST00000616981 3366 ntAPPRIS P3 TSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
RNF4P78317 MGAT4A-203ENST00000409391 2018 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
RNF4P78317 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
RNF4P78317 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
RNF4P78317 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 AL355834.1-201ENST00000556602 3965 ntBASIC5.68□□□□□ -1.5
RNF4P78317 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC5.68□□□□□ -1.5
RNF4P78317 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
RNF4P78317 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.68□□□□□ -1.5
RNF4P78317 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.68□□□□□ -1.5
RNF4P78317 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC5.68□□□□□ -1.5
RNF4P78317 AC092724.1-201ENST00000624623 3397 ntBASIC5.68□□□□□ -1.5
RNF4P78317 AC010266.2-201ENST00000564741 3255 ntBASIC5.68□□□□□ -1.5
RNF4P78317 PRIM2-201ENST00000274891 864 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 MT-ND3-201ENST00000361227 346 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
RNF4P78317 SNORD115.1-201ENST00000391109 76 ntBASIC5.68□□□□□ -1.5
RNF4P78317 RPL31P1-201ENST00000398116 372 ntBASIC5.68□□□□□ -1.5
RNF4P78317 DHFRP6-201ENST00000401776 268 ntBASIC5.68□□□□□ -1.5
RNF4P78317 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC5.68□□□□□ -1.5
RNF4P78317 LINC00701-201ENST00000418295 742 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
RNF4P78317 ZNF90P2-204ENST00000419323 1075 ntBASIC5.68□□□□□ -1.5
RNF4P78317 AC007568.1-201ENST00000422912 471 ntBASIC5.68□□□□□ -1.5
RNF4P78317 MTCO3P21-201ENST00000430791 643 ntBASIC5.68□□□□□ -1.5
RNF4P78317 PPIAP13-201ENST00000434706 478 ntBASIC5.68□□□□□ -1.5
RNF4P78317 RPS10P18-201ENST00000442662 495 ntBASIC5.68□□□□□ -1.5
RNF4P78317 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC5.68□□□□□ -1.5
RNF4P78317 AC098847.1-201ENST00000473094 348 ntBASIC5.68□□□□□ -1.5
RNF4P78317 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.68□□□□□ -1.5
RNF4P78317 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC5.68□□□□□ -1.5
RNF4P78317 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.68□□□□□ -1.5
RNF4P78317 AL512310.1-201ENST00000548639 172 ntBASIC5.68□□□□□ -1.5
RNF4P78317 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC5.68□□□□□ -1.5
RNF4P78317 AC089998.2-201ENST00000551856 277 ntTSL 3 BASIC5.68□□□□□ -1.5
RNF4P78317 AC068643.2-202ENST00000552759 622 ntTSL 3 BASIC5.68□□□□□ -1.5
RNF4P78317 AC009101.1-201ENST00000568135 242 ntBASIC5.68□□□□□ -1.5
RNF4P78317 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.68□□□□□ -1.5
RNF4P78317 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC5.68□□□□□ -1.5
RNF4P78317 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC5.68□□□□□ -1.5
RNF4P78317 AC005261.5-201ENST00000596280 355 ntBASIC5.68□□□□□ -1.5
RNF4P78317 AC068768.2-201ENST00000602352 343 ntBASIC5.68□□□□□ -1.5
RNF4P78317 AC005034.5-201ENST00000604219 466 ntBASIC5.68□□□□□ -1.5
RNF4P78317 AC055876.5-201ENST00000605667 259 ntBASIC5.68□□□□□ -1.5
RNF4P78317 AL161734.1-201ENST00000609720 557 ntBASIC5.68□□□□□ -1.5
RNF4P78317 Z95327.3-201ENST00000610385 572 ntBASIC5.68□□□□□ -1.5
RNF4P78317 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC5.68□□□□□ -1.5
RNF4P78317 AP002505.2-201ENST00000623585 696 ntBASIC5.68□□□□□ -1.5
RNF4P78317 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC5.68□□□□□ -1.5
RNF4P78317 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 96 ms