Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC5.96□□□□□ -1.46
COL8A1P27658 FCHSD2-203ENST00000409314 4509 ntTSL 5 BASIC5.96□□□□□ -1.46
COL8A1P27658 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC5.96□□□□□ -1.46
COL8A1P27658 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.96□□□□□ -1.46
COL8A1P27658 AC138915.4-201ENST00000565549 4147 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 PPWD1-201ENST00000261308 2166 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 PPWD1-214ENST00000535264 2195 ntTSL 2 BASIC5.96□□□□□ -1.46
COL8A1P27658 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.96□□□□□ -1.46
COL8A1P27658 SP110-203ENST00000358662 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 OR7D2-203ENST00000642043 3157 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
COL8A1P27658 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL8A1P27658 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC5.96□□□□□ -1.46
COL8A1P27658 PUS3-203ENST00000530811 1792 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 AC034111.1-201ENST00000562143 3770 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 EIF3L-203ENST00000412331 3220 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC5.95□□□□□ -1.46
COL8A1P27658 TP53BP1-202ENST00000382039 6015 ntTSL 5 BASIC5.95□□□□□ -1.46
COL8A1P27658 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 UGT2B4-201ENST00000305107 2103 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 OFD1P5Y-201ENST00000447585 2590 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 SPATA31C2-201ENST00000324915 3777 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 Y_RNA.81-201ENST00000362997 102 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 RNU1-115P-201ENST00000365329 160 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 CD84-204ENST00000368048 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC5.95□□□□□ -1.46
COL8A1P27658 Y_RNA.562-201ENST00000384695 113 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 RNU6-823P-201ENST00000391042 103 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 UBBP1-201ENST00000392399 473 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 RNA5SP198-201ENST00000410376 127 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.95□□□□□ -1.46
COL8A1P27658 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 CHIAP3-201ENST00000423668 1133 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC5.95□□□□□ -1.46
COL8A1P27658 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.95□□□□□ -1.46
COL8A1P27658 GAPDHP48-201ENST00000436626 961 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 AC006512.1-201ENST00000468816 291 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 RPL23AP11-201ENST00000475260 469 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 PPIAP19-201ENST00000486414 492 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 DCX-205ENST00000488120 2476 ntAPPRIS ALT1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 PABPC1P1-201ENST00000506347 591 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 AC093870.1-201ENST00000506837 213 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 AC004062.1-201ENST00000509926 645 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 AC022296.2-201ENST00000512424 202 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 TPT1-AS1-206ENST00000519454 709 ntTSL 5 BASIC5.95□□□□□ -1.46
COL8A1P27658 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC5.95□□□□□ -1.46
COL8A1P27658 TRIM77BP-201ENST00000524985 1119 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 AP000857.1-201ENST00000532151 543 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 AC010185.1-201ENST00000542489 456 ntTSL 3 BASIC5.95□□□□□ -1.46
COL8A1P27658 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.95□□□□□ -1.46
COL8A1P27658 MED21-206ENST00000546323 575 ntTSL 3 BASIC5.95□□□□□ -1.46
COL8A1P27658 AC090022.1-201ENST00000546569 311 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 MIR3118-1-201ENST00000581787 76 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 AP001029.3-201ENST00000588063 596 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 AL353593.3-201ENST00000602778 764 ntTSL 2 BASIC5.95□□□□□ -1.46
COL8A1P27658 IGKV2OR2-1-201ENST00000605129 304 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 AC121334.2-201ENST00000605387 271 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 DARS-AS1-227ENST00000627442 633 ntTSL 5 BASIC5.95□□□□□ -1.46
COL8A1P27658 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 KCNJ10-207ENST00000638868 3883 ntAPPRIS P1 TSL 5 BASIC5.95□□□□□ -1.46
COL8A1P27658 RAD51AP2-201ENST00000399080 3724 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 MAPK10-241ENST00000639234 2985 ntTSL 5 BASIC5.95□□□□□ -1.46
COL8A1P27658 ZNF770-201ENST00000356321 5439 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 AC068870.3-201ENST00000625077 2536 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC5.95□□□□□ -1.46
COL8A1P27658 LRMP-204ENST00000547044 2208 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 CCDC125-203ENST00000396499 3615 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 Z83820.1-201ENST00000456978 1499 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 RBM46-201ENST00000281722 2583 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 FOPNL-201ENST00000255759 2275 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 BX322650.1-201ENST00000332359 2143 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 MORC1-202ENST00000483760 3056 ntAPPRIS ALT2 TSL 2 BASIC5.95□□□□□ -1.46
COL8A1P27658 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 TRIM51HP-202ENST00000530412 1823 ntBASIC5.95□□□□□ -1.46
COL8A1P27658 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC5.95□□□□□ -1.46
COL8A1P27658 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL8A1P27658 AL355377.1-201ENST00000621125 1653 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 ZNF107-206ENST00000620827 5685 ntAPPRIS P4 TSL 4 BASIC5.94□□□□□ -1.46
COL8A1P27658 AAK1-203ENST00000409085 11345 ntAPPRIS P1 TSL 5 BASIC5.94□□□□□ -1.46
COL8A1P27658 CASC19-260ENST00000641828 2001 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 AC061975.7-201ENST00000592016 2692 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 TTC8-217ENST00000622513 5270 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 ZNF532-223ENST00000591230 4450 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 IL2RA-203ENST00000379959 3176 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 AL162171.3-201ENST00000617439 3178 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 UBE2V1-201ENST00000340309 2536 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 AC093775.1-201ENST00000624154 1868 ntBASIC5.94□□□□□ -1.46
COL8A1P27658 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 LINC01653-201ENST00000456026 1728 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL8A1P27658 AL512329.1-201ENST00000404600 1592 ntBASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms