Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIG1P18858 AC007938.2-201ENST00000604666 2634 ntBASIC6.53□□□□□ -1.36
LIG1P18858 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
LIG1P18858 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG1P18858 AC027088.4-201ENST00000611559 1947 ntBASIC6.53□□□□□ -1.36
LIG1P18858 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC6.53□□□□□ -1.36
LIG1P18858 RNU5D-1-201ENST00000363299 116 ntBASIC6.53□□□□□ -1.36
LIG1P18858 RNU5F-7P-201ENST00000363696 115 ntBASIC6.53□□□□□ -1.36
LIG1P18858 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC6.53□□□□□ -1.36
LIG1P18858 Y_RNA.453-201ENST00000384223 109 ntBASIC6.53□□□□□ -1.36
LIG1P18858 RNA5SP122-201ENST00000384457 108 ntBASIC6.53□□□□□ -1.36
LIG1P18858 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC6.53□□□□□ -1.36
LIG1P18858 AL009174.1-201ENST00000426577 416 ntBASIC6.53□□□□□ -1.36
LIG1P18858 Z93242.1-201ENST00000427102 353 ntBASIC6.53□□□□□ -1.36
LIG1P18858 LINC01626-201ENST00000431997 452 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG1P18858 AL389925.1-201ENST00000432257 728 ntBASIC6.53□□□□□ -1.36
LIG1P18858 MEOX2-AS1-201ENST00000442176 697 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG1P18858 NPM1P39-201ENST00000449818 867 ntBASIC6.53□□□□□ -1.36
LIG1P18858 AL591623.2-201ENST00000449978 222 ntBASIC6.53□□□□□ -1.36
LIG1P18858 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG1P18858 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG1P18858 AC013267.1-201ENST00000458227 267 ntBASIC6.53□□□□□ -1.36
LIG1P18858 OR2A1-AS1-202ENST00000467944 422 ntBASIC6.53□□□□□ -1.36
LIG1P18858 RN7SL57P-201ENST00000493687 290 ntBASIC6.53□□□□□ -1.36
LIG1P18858 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC6.53□□□□□ -1.36
LIG1P18858 RPS17P5-201ENST00000498293 408 ntBASIC6.53□□□□□ -1.36
LIG1P18858 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG1P18858 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.53□□□□□ -1.36
LIG1P18858 NREP-AS1-202ENST00000507222 610 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG1P18858 AC010342.1-201ENST00000514047 877 ntBASIC6.53□□□□□ -1.36
LIG1P18858 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC6.53□□□□□ -1.36
LIG1P18858 RNA5SP271-201ENST00000516700 88 ntBASIC6.53□□□□□ -1.36
LIG1P18858 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG1P18858 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG1P18858 AC087276.1-201ENST00000529659 480 ntBASIC6.53□□□□□ -1.36
LIG1P18858 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC6.53□□□□□ -1.36
LIG1P18858 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC6.53□□□□□ -1.36
LIG1P18858 RNASEH2B-AS1-206ENST00000601286 657 ntTSL 5 BASIC6.53□□□□□ -1.36
LIG1P18858 AC090578.1-201ENST00000604955 591 ntBASIC6.53□□□□□ -1.36
LIG1P18858 AC098614.4-201ENST00000607601 462 ntBASIC6.53□□□□□ -1.36
LIG1P18858 AC064836.2-201ENST00000609491 462 ntBASIC6.53□□□□□ -1.36
LIG1P18858 DAOA-AS1_2.2-201ENST00000610818 204 ntBASIC6.53□□□□□ -1.36
LIG1P18858 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC6.53□□□□□ -1.36
LIG1P18858 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC6.53□□□□□ -1.36
LIG1P18858 AC138965.3-201ENST00000623875 498 ntBASIC6.53□□□□□ -1.36
LIG1P18858 AP000648.2-201ENST00000624182 404 ntBASIC6.53□□□□□ -1.36
LIG1P18858 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG1P18858 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG1P18858 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIG1P18858 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIG1P18858 RXFP1-203ENST00000343542 2130 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
LIG1P18858 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
LIG1P18858 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIG1P18858 ZNF680P1-201ENST00000436625 1469 ntBASIC6.53□□□□□ -1.36
LIG1P18858 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.53□□□□□ -1.36
LIG1P18858 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.53□□□□□ -1.36
LIG1P18858 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.36
LIG1P18858 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC6.52□□□□□ -1.36
LIG1P18858 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIG1P18858 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC6.52□□□□□ -1.37
LIG1P18858 GTF2H2B-203ENST00000508065 1432 ntBASIC6.52□□□□□ -1.37
LIG1P18858 AC114786.1-201ENST00000512892 1415 ntBASIC6.52□□□□□ -1.37
LIG1P18858 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIG1P18858 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
LIG1P18858 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC6.52□□□□□ -1.37
LIG1P18858 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC6.52□□□□□ -1.37
LIG1P18858 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC6.52□□□□□ -1.37
LIG1P18858 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIG1P18858 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
LIG1P18858 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC6.52□□□□□ -1.37
LIG1P18858 SEC61A2-203ENST00000379017 600 ntTSL 5 BASIC6.52□□□□□ -1.37
LIG1P18858 RNU6-185P-201ENST00000384421 107 ntBASIC6.52□□□□□ -1.37
LIG1P18858 MIR130A-201ENST00000385274 89 ntBASIC6.52□□□□□ -1.37
LIG1P18858 AC005042.1-201ENST00000393397 800 ntBASIC6.52□□□□□ -1.37
LIG1P18858 SAMD13-206ENST00000394834 785 ntAPPRIS P1 TSL 2 BASIC6.52□□□□□ -1.37
LIG1P18858 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
LIG1P18858 SNORA11C-201ENST00000408532 129 ntBASIC6.52□□□□□ -1.37
LIG1P18858 RNU6-248P-201ENST00000410720 107 ntBASIC6.52□□□□□ -1.37
LIG1P18858 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC6.52□□□□□ -1.37
LIG1P18858 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC6.52□□□□□ -1.37
LIG1P18858 HMGB3P23-201ENST00000414981 585 ntBASIC6.52□□□□□ -1.37
LIG1P18858 AC092647.1-201ENST00000420654 287 ntBASIC6.52□□□□□ -1.37
LIG1P18858 OR10T1P-201ENST00000424327 947 ntBASIC6.52□□□□□ -1.37
LIG1P18858 RPS29P14-201ENST00000431518 171 ntBASIC6.52□□□□□ -1.37
LIG1P18858 AC018742.1-201ENST00000435237 488 ntTSL 3 BASIC6.52□□□□□ -1.37
LIG1P18858 AC068533.3-201ENST00000435524 404 ntTSL 5 BASIC6.52□□□□□ -1.37
LIG1P18858 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC6.52□□□□□ -1.37
LIG1P18858 AL450263.2-201ENST00000439400 589 ntBASIC6.52□□□□□ -1.37
LIG1P18858 AC244505.5-201ENST00000443639 207 ntBASIC6.52□□□□□ -1.37
LIG1P18858 OR7E116P-201ENST00000448529 957 ntBASIC6.52□□□□□ -1.37
LIG1P18858 AC022431.1-201ENST00000450941 438 ntBASIC6.52□□□□□ -1.37
LIG1P18858 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC6.52□□□□□ -1.37
LIG1P18858 GEMIN2P1-201ENST00000454246 752 ntBASIC6.52□□□□□ -1.37
LIG1P18858 SNRPFP4-201ENST00000456366 242 ntBASIC6.52□□□□□ -1.37
LIG1P18858 ARPC3P2-201ENST00000457786 533 ntBASIC6.52□□□□□ -1.37
LIG1P18858 UBFD1P1-201ENST00000473259 814 ntBASIC6.52□□□□□ -1.37
LIG1P18858 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC6.52□□□□□ -1.37
LIG1P18858 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
LIG1P18858 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
LIG1P18858 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 89.1 ms