Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 RNU1-44P-201ENST00000384453 163 ntBASIC3.76□□□□□ -1.81
VCANP13611 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC3.76□□□□□ -1.81
VCANP13611 AC005189.1-201ENST00000431286 310 ntBASIC3.76□□□□□ -1.81
VCANP13611 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.76□□□□□ -1.81
VCANP13611 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.76□□□□□ -1.81
VCANP13611 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.76□□□□□ -1.81
VCANP13611 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC3.76□□□□□ -1.81
VCANP13611 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC3.76□□□□□ -1.81
VCANP13611 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.76□□□□□ -1.81
VCANP13611 ANK3-216ENST00000503366 5792 ntAPPRIS ALT2 TSL 2 BASIC3.76□□□□□ -1.81
VCANP13611 HNMT-202ENST00000280097 3295 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VCANP13611 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC3.76□□□□□ -1.81
VCANP13611 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
VCANP13611 NOL8P1-201ENST00000508336 3529 ntBASIC3.76□□□□□ -1.81
VCANP13611 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
VCANP13611 FGD4-211ENST00000531134 2924 ntTSL 2 BASIC3.76□□□□□ -1.81
VCANP13611 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.81
VCANP13611 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC3.76□□□□□ -1.81
VCANP13611 HLA-N-201ENST00000437516 135 ntBASIC3.76□□□□□ -1.81
VCANP13611 RNU6-991P-201ENST00000516168 107 ntBASIC3.76□□□□□ -1.81
VCANP13611 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC3.76□□□□□ -1.81
VCANP13611 AC019278.1-201ENST00000623516 479 ntBASIC3.76□□□□□ -1.81
VCANP13611 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 KIF1B-204ENST00000377086 10669 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC3.75□□□□□ -1.81
VCANP13611 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 MS4A14-201ENST00000300187 2997 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.75□□□□□ -1.81
VCANP13611 RPL5P12-201ENST00000477071 851 ntBASIC3.75□□□□□ -1.81
VCANP13611 AC106734.1-201ENST00000568646 663 ntBASIC3.75□□□□□ -1.81
VCANP13611 AC005086.4-201ENST00000623065 213 ntBASIC3.75□□□□□ -1.81
VCANP13611 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.75□□□□□ -1.81
VCANP13611 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC3.75□□□□□ -1.81
VCANP13611 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
VCANP13611 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC3.75□□□□□ -1.81
VCANP13611 VDAC1P9-201ENST00000412766 841 ntBASIC3.75□□□□□ -1.81
VCANP13611 TXNP1-201ENST00000441872 371 ntBASIC3.75□□□□□ -1.81
VCANP13611 AC068196.1-201ENST00000456895 833 ntTSL 3 BASIC3.75□□□□□ -1.81
VCANP13611 PDLIM1P4-201ENST00000504327 1006 ntBASIC3.75□□□□□ -1.81
VCANP13611 AC090993.1-201ENST00000522460 582 ntTSL 3 BASIC3.75□□□□□ -1.81
VCANP13611 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.75□□□□□ -1.81
VCANP13611 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC3.75□□□□□ -1.81
VCANP13611 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
VCANP13611 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VCANP13611 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC3.74□□□□□ -1.81
VCANP13611 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
VCANP13611 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC3.74□□□□□ -1.81
VCANP13611 BX119904.3-201ENST00000428194 957 ntBASIC3.74□□□□□ -1.81
VCANP13611 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.74□□□□□ -1.81
VCANP13611 RPL7P12-201ENST00000446719 750 ntBASIC3.74□□□□□ -1.81
VCANP13611 RPL31P50-201ENST00000471002 296 ntBASIC3.74□□□□□ -1.81
VCANP13611 AC019227.1-201ENST00000526902 510 ntBASIC3.74□□□□□ -1.81
VCANP13611 MIR4435-1-201ENST00000582552 80 ntBASIC3.74□□□□□ -1.81
VCANP13611 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC3.74□□□□□ -1.81
VCANP13611 AC009464.1-201ENST00000615731 469 ntBASIC3.74□□□□□ -1.81
VCANP13611 AL034408.1-201ENST00000637712 664 ntBASIC3.74□□□□□ -1.81
VCANP13611 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VCANP13611 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC3.74□□□□□ -1.81
VCANP13611 LIPT1P1-201ENST00000415870 1186 ntBASIC3.74□□□□□ -1.81
VCANP13611 AC008780.1-201ENST00000513392 409 ntTSL 5 BASIC3.74□□□□□ -1.81
VCANP13611 SNORA70.18-201ENST00000516696 98 ntBASIC3.74□□□□□ -1.81
VCANP13611 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.74□□□□□ -1.81
VCANP13611 DPPA3P2-201ENST00000553589 478 ntBASIC3.74□□□□□ -1.81
VCANP13611 OR51C1P-201ENST00000608504 942 ntBASIC3.74□□□□□ -1.81
VCANP13611 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC3.74□□□□□ -1.81
VCANP13611 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.74□□□□□ -1.81
VCANP13611 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC3.74□□□□□ -1.81
VCANP13611 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC3.74□□□□□ -1.81
VCANP13611 SF3B3-201ENST00000302516 9720 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VCANP13611 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
VCANP13611 SNORD66.1-201ENST00000391230 76 ntBASIC3.74□□□□□ -1.81
VCANP13611 AL365356.1-201ENST00000411512 736 ntTSL 3 BASIC3.74□□□□□ -1.81
VCANP13611 AC245054.1-201ENST00000420944 258 ntBASIC3.74□□□□□ -1.81
VCANP13611 AL109933.2-201ENST00000452651 260 ntBASIC3.74□□□□□ -1.81
VCANP13611 UBL5P3-201ENST00000475112 231 ntBASIC3.74□□□□□ -1.81
VCANP13611 AL096803.3-201ENST00000609032 532 ntBASIC3.74□□□□□ -1.81
VCANP13611 ADPRM-204ENST00000609540 1138 ntTSL 5 BASIC3.74□□□□□ -1.81
VCANP13611 AC124312.6-202ENST00000623624 418 ntBASIC3.74□□□□□ -1.81
VCANP13611 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
VCANP13611 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
VCANP13611 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.73□□□□□ -1.81
VCANP13611 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
VCANP13611 SNORA5.1-201ENST00000384275 131 ntBASIC3.73□□□□□ -1.81
VCANP13611 MIR887-201ENST00000401258 79 ntBASIC3.73□□□□□ -1.81
VCANP13611 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC3.73□□□□□ -1.81
VCANP13611 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC3.73□□□□□ -1.81
VCANP13611 GTF3AP2-201ENST00000557014 266 ntBASIC3.73□□□□□ -1.81
VCANP13611 CKS1BP3-201ENST00000600888 237 ntBASIC3.73□□□□□ -1.81
VCANP13611 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
VCANP13611 LINC01002-206ENST00000631772 539 ntTSL 4 BASIC3.73□□□□□ -1.81
VCANP13611 AL359693.1-201ENST00000614959 2407 ntBASIC3.73□□□□□ -1.81
VCANP13611 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms