Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.74
LMX1BO60663 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LMX1BO60663 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC4.21□□□□□ -1.74
LMX1BO60663 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.21□□□□□ -1.74
LMX1BO60663 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.21□□□□□ -1.74
LMX1BO60663 CFHR3-201ENST00000367425 1645 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
LMX1BO60663 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
LMX1BO60663 MTCO1P18-201ENST00000455518 1419 ntBASIC4.21□□□□□ -1.74
LMX1BO60663 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC4.21□□□□□ -1.74
LMX1BO60663 ZNF652P1-201ENST00000442420 1309 ntBASIC4.21□□□□□ -1.74
LMX1BO60663 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
LMX1BO60663 AC104446.1-201ENST00000613728 1321 ntBASIC4.21□□□□□ -1.74
LMX1BO60663 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 AC107068.1-201ENST00000563286 4218 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 SPATA2P1-201ENST00000431223 2055 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 SOCS5P3-201ENST00000425115 1576 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 SEPT7-205ENST00000432293 1362 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
LMX1BO60663 RNU1-83P-201ENST00000363426 164 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 RNU6-353P-201ENST00000364266 108 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 AL672167.2-201ENST00000377164 879 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 U3.35-201ENST00000408405 208 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.2□□□□□ -1.74
LMX1BO60663 AC064871.1-202ENST00000413954 382 ntTSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 SPATA17-AS1-201ENST00000415765 420 ntTSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 AL034379.1-201ENST00000423216 253 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 GTF2IP2-201ENST00000424290 697 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AL589823.1-201ENST00000429577 183 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.2□□□□□ -1.74
LMX1BO60663 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC4.2□□□□□ -1.74
LMX1BO60663 AC005345.1-201ENST00000431868 217 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AC004938.1-201ENST00000438468 308 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 LINC01802-201ENST00000438824 523 ntTSL 3 BASIC4.2□□□□□ -1.74
LMX1BO60663 AC092393.1-201ENST00000439625 742 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 FGF7P5-201ENST00000441829 291 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 GSAP-208ENST00000441833 737 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
LMX1BO60663 CASP3P1-201ENST00000446037 609 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC4.2□□□□□ -1.74
LMX1BO60663 HSPE1P22-201ENST00000456856 327 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AL138737.1-201ENST00000456896 1252 ntTSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 RNU7-140P-201ENST00000459546 60 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC4.2□□□□□ -1.74
LMX1BO60663 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC4.2□□□□□ -1.74
LMX1BO60663 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 CDH12P2-201ENST00000504393 298 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 LAMTOR3P2-201ENST00000504479 232 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 GAPDHP56-201ENST00000506031 988 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 RN7SKP34-201ENST00000516142 244 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 RNU6-1308P-201ENST00000516817 103 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.2□□□□□ -1.74
LMX1BO60663 AP000859.1-201ENST00000525536 307 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC4.2□□□□□ -1.74
LMX1BO60663 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC4.2□□□□□ -1.74
LMX1BO60663 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC4.2□□□□□ -1.74
LMX1BO60663 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC4.2□□□□□ -1.74
LMX1BO60663 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.2□□□□□ -1.74
LMX1BO60663 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC4.2□□□□□ -1.74
LMX1BO60663 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.2□□□□□ -1.74
LMX1BO60663 AL354943.1-201ENST00000572103 781 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 MIR4284-201ENST00000578924 81 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AC087399.1-201ENST00000579769 573 ntTSL 4 BASIC4.2□□□□□ -1.74
LMX1BO60663 AP005230.1-201ENST00000585072 675 ntTSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 VN1R83P-201ENST00000595685 445 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.2□□□□□ -1.74
LMX1BO60663 AP001521.2-201ENST00000608772 546 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AC090425.2-201ENST00000608818 501 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AP004607.9-201ENST00000618202 316 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AC073569.3-201ENST00000619055 682 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC4.2□□□□□ -1.74
LMX1BO60663 AC011815.3-201ENST00000624194 473 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
LMX1BO60663 VN2R3P-201ENST00000422626 1412 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
LMX1BO60663 AP000542.2-201ENST00000623199 6179 ntBASIC4.2□□□□□ -1.74
LMX1BO60663 MAPK10-236ENST00000638313 3971 ntTSL 5 BASIC4.2□□□□□ -1.74
LMX1BO60663 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
LMX1BO60663 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.19□□□□□ -1.74
LMX1BO60663 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
LMX1BO60663 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
LMX1BO60663 COA1-201ENST00000223336 927 ntAPPRIS P3 TSL 2 BASIC4.19□□□□□ -1.74
LMX1BO60663 HOMER1-201ENST00000282260 774 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms