Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 AC010468.3-201ENST00000508225 458 ntBASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 LINC02326-201ENST00000552028 540 ntTSL 3 BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 AC025918.2-201ENST00000558683 763 ntBASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 HSPD1P14-201ENST00000432666 1618 ntBASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 RMST-202ENST00000541282 2099 ntTSL 2 BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC8.04□□□□□ -1.12
SHROOM4Q9ULL8 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 MIR921-201ENST00000401133 56 ntBASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 MIR1911-201ENST00000410783 80 ntBASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AC091286.1-201ENST00000431233 461 ntBASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 MTND2P6-201ENST00000455337 1030 ntBASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 RN7SKP141-201ENST00000516167 338 ntBASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AP003049.1-201ENST00000529418 457 ntBASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AC008966.2-201ENST00000606157 453 ntBASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AC110792.4-201ENST00000609843 298 ntBASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AL391261.4-201ENST00000616012 481 ntBASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AC090617.9-201ENST00000623751 147 ntBASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AF067845.5-201ENST00000633906 437 ntTSL 3 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 AL133268.1-201ENST00000405676 1401 ntBASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC8.03□□□□□ -1.12
SHROOM4Q9ULL8 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC8.02□□□□□ -1.12
SHROOM4Q9ULL8 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AP001002.1-201ENST00000625148 1513 ntBASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 Y_RNA.110-201ENST00000363220 99 ntBASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 RN7SKP182-201ENST00000410772 298 ntBASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AL357078.2-201ENST00000416486 427 ntBASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 EIF4A1P1-201ENST00000420241 934 ntBASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 ATP5G1P3-201ENST00000463301 410 ntBASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AL136520.1-202ENST00000555494 763 ntBASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AL355512.1-201ENST00000609514 488 ntTSL 5 BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AC011472.4-201ENST00000615848 491 ntBASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AL357559.1-201ENST00000622228 274 ntBASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AC005086.4-201ENST00000623065 213 ntBASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 SPEF2-216ENST00000637569 7350 ntAPPRIS ALT2 TSL 5 BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 ZNF90P1-201ENST00000480493 1951 ntBASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC8.02□□□□□ -1.13
SHROOM4Q9ULL8 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 RN7SKP222-201ENST00000410651 315 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 RAB9AP3-201ENST00000412737 573 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 DPY19L1P2-201ENST00000426647 915 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 RPL34P26-201ENST00000445636 354 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 RAB9AP1-201ENST00000449393 573 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 AC007967.1-201ENST00000455422 1159 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 SNRPCP3-201ENST00000474888 476 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 SUCLG2-AS1-203ENST00000496640 862 ntTSL 5 BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 MED6-207ENST00000554963 975 ntAPPRIS ALT1 TSL 5 BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 RPL23AP97-201ENST00000568955 471 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 AC087499.8-201ENST00000578406 226 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 CBX3P2-202ENST00000583365 535 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 AF131215.7-201ENST00000602443 707 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 PRLR-220ENST00000620785 11063 ntTSL 5 BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 AP000432.2-201ENST00000624164 2048 ntBASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 SLC17A4-201ENST00000377905 3616 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC8.01□□□□□ -1.13
SHROOM4Q9ULL8 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC8□□□□□ -1.13
SHROOM4Q9ULL8 RNU6-650P-201ENST00000365658 111 ntBASIC8□□□□□ -1.13
SHROOM4Q9ULL8 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
SHROOM4Q9ULL8 TRAJ4-201ENST00000390533 63 ntAPPRIS P1 BASIC8□□□□□ -1.13
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms