Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 HMGB1P21-201ENST00000502313 581 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC021192.1-201ENST00000510169 791 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AL161713.1-201ENST00000555538 145 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 HMGB3P26-201ENST00000560051 582 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC027455.1-201ENST00000574104 594 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 ZNF230-204ENST00000585632 579 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC011492.1-201ENST00000600023 315 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AL008729.2-201ENST00000606393 473 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AL121594.5-201ENST00000631724 573 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AL359922.3-201ENST00000624779 1670 ntBASIC4.82□□□□□ -1.64
VPS28Q9UK41 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS28Q9UK41 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS28Q9UK41 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS28Q9UK41 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
VPS28Q9UK41 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS28Q9UK41 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC000123.3-201ENST00000624029 4975 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS28Q9UK41 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
VPS28Q9UK41 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS28Q9UK41 IL6STP1-201ENST00000346911 1020 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 RNU1-83P-201ENST00000363426 164 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AL590762.2-201ENST00000395798 571 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 TAF13P2-201ENST00000416876 286 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AL078581.1-201ENST00000419134 340 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC069213.2-201ENST00000420238 366 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AL009174.1-201ENST00000426577 416 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 TRBV26OR9-2-201ENST00000432077 293 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC004938.1-201ENST00000438468 308 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 CEACAMP9-201ENST00000442990 513 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AL357514.1-201ENST00000446322 488 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 RPL23AP15-201ENST00000450202 459 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 CAPZA2-212ENST00000490693 809 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC008780.2-201ENST00000509844 820 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC005351.1-201ENST00000511152 786 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC021146.3-201ENST00000511911 260 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 RNU6-416P-201ENST00000516265 103 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 FKBP1BP1-201ENST00000553366 325 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 MTCO1P40-201ENST00000574371 625 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 MIR4458-201ENST00000578872 75 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 RN7SL690P-201ENST00000582087 240 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC072062.1-205ENST00000595058 962 ntTSL 3 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC005191.1-201ENST00000603950 358 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AP002802.2-201ENST00000605877 235 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 MIR6748-201ENST00000610433 71 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 RNU6-1192P-201ENST00000612197 107 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 RNU6-489P-201ENST00000618289 107 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AL512427.1-201ENST00000618593 349 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC126544.2-201ENST00000625174 749 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 SMIM18-202ENST00000626298 114 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC006994.2-202ENST00000639259 3828 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AC139713.2-210ENST00000641741 992 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS28Q9UK41 ZFRP1-201ENST00000457579 2970 ntBASIC4.81□□□□□ -1.64
VPS28Q9UK41 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 ALG6-201ENST00000263440 1895 ntAPPRIS ALT1 TSL 5 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
VPS28Q9UK41 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 NUTM2B-AS1-213ENST00000619625 7611 ntTSL 2 BASIC4.81□□□□□ -1.64
VPS28Q9UK41 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
VPS28Q9UK41 LINC02240-201ENST00000564199 1336 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
VPS28Q9UK41 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 AL445487.1-201ENST00000415694 1580 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 RNU6-353P-201ENST00000364266 108 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 SNORA71.2-201ENST00000364941 134 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 Z98745.1-201ENST00000402553 494 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 RPS4XP9-201ENST00000405151 780 ntBASIC4.8□□□□□ -1.64
VPS28Q9UK41 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC4.8□□□□□ -1.64
VPS28Q9UK41 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms