Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 TAF9P2-201ENST00000454958 515 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 MTCO2P18-201ENST00000457151 658 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC108161.1-201ENST00000461060 402 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 RPS29P22-201ENST00000472363 168 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 RPL21P6-201ENST00000479171 504 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC007686.1-201ENST00000488511 463 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 LAMTOR3P2-201ENST00000504479 232 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC008494.2-201ENST00000514544 370 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 RNA5SP228-201ENST00000516232 133 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AL390726.5-202ENST00000564800 256 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC131274.1-201ENST00000582507 254 ntTSL 3 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AP005262.1-201ENST00000582646 997 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 MIR7853-201ENST00000584820 132 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC090227.2-201ENST00000591105 340 ntTSL 5 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 VN1R84P-201ENST00000593697 235 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC064872.1-201ENST00000604823 1072 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC092653.1-201ENST00000608509 531 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 MIR6798-201ENST00000612887 67 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AL136981.2-201ENST00000617319 734 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC087385.3-201ENST00000620477 187 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC011447.7-201ENST00000624228 1590 ntBASIC5.33□□□□□ -1.56
TDP1Q9NUW8 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.33□□□□□ -1.56
TDP1Q9NUW8 TTC41P-203ENST00000548527 1475 ntTSL 5 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 TUBD1-214ENST00000592426 1460 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 OR9G4-201ENST00000302957 984 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 RNU6-1066P-201ENST00000363573 105 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 RNA5SP428-201ENST00000365129 132 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 SNORD116-23-201ENST00000384645 92 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 MIR589-201ENST00000385238 99 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 Z97832.1-201ENST00000402490 328 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AL133264.1-201ENST00000407157 562 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AL139098.1-201ENST00000407291 389 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 TPT1P2-201ENST00000413105 503 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 USP9YP9-201ENST00000429406 715 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AC244035.1-201ENST00000430042 390 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 ARL6IP1P2-201ENST00000431356 563 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 RPS25P9-201ENST00000435591 252 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 RNU6-678P-201ENST00000516832 109 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 TBCA-203ENST00000517679 545 ntTSL 3 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 RPL12P22-201ENST00000519073 490 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 HIGD1AP6-201ENST00000521833 279 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AC007115.1-201ENST00000546853 234 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AL121766.1-201ENST00000547436 487 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 CR383656.6-201ENST00000550518 394 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 NMNAT1P1-201ENST00000554095 876 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 TTN-AS1-213ENST00000584485 838 ntTSL 3 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AF131215.7-201ENST00000602443 707 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AP000811.1-201ENST00000603803 651 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AC011626.1-201ENST00000604710 562 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AC098679.5-201ENST00000624394 571 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 IRF5P1-201ENST00000504852 2164 ntBASIC5.32□□□□□ -1.56
TDP1Q9NUW8 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
TDP1Q9NUW8 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 MBNL1-203ENST00000324196 5225 ntTSL 5 BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 AL390237.1-201ENST00000404226 1415 ntBASIC5.31□□□□□ -1.56
TDP1Q9NUW8 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
TDP1Q9NUW8 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms