Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
CHMP4AQ9BY43 AC106871.1-201ENST00000568324 3102 ntBASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 FAM91A3P-201ENST00000456826 2544 ntBASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 PABPC1P7-201ENST00000413177 1513 ntBASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 DEFB129-201ENST00000246105 698 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 SNORA70F-201ENST00000384142 135 ntBASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 IL6-203ENST00000401651 539 ntTSL 2 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 RNU4-27P-201ENST00000410889 139 ntBASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 MTATP6P11-201ENST00000428071 670 ntBASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AL590867.3-201ENST00000436953 438 ntTSL 3 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AC004865.1-201ENST00000442276 1003 ntBASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 LINC00393-202ENST00000452852 485 ntTSL 3 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 HMGN3P1-201ENST00000453847 193 ntBASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AP000873.1-201ENST00000463987 400 ntBASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AC020890.1-201ENST00000491837 504 ntBASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AC099520.1-203ENST00000506976 464 ntTSL 3 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AC104115.2-201ENST00000523026 687 ntBASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 AC011503.1-202ENST00000598914 919 ntTSL 2 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
CHMP4AQ9BY43 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 SEPT7P7-201ENST00000420492 1301 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 EIF2A-201ENST00000273435 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 ASB17-201ENST00000284142 1107 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 LINC02384-201ENST00000360485 471 ntTSL 5 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 SNORD113.2-201ENST00000364166 89 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 FABP12P1-201ENST00000401911 322 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 LINC00894-201ENST00000413076 403 ntTSL 3 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 RGS17P1-201ENST00000423358 553 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 AL732292.1-201ENST00000426692 226 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 AL590399.6-201ENST00000446396 307 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 CREM-238ENST00000488741 651 ntTSL 2 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 RNF138P1-201ENST00000502765 546 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 TMEM248P1-201ENST00000510579 951 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 AP000916.1-201ENST00000533869 835 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 UBTFL9-201ENST00000534504 1148 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 MTCYBP28-201ENST00000566728 1132 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 AC022069.1-201ENST00000582910 658 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 AC020978.9-201ENST00000624380 1141 ntBASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 UGT2B4-207ENST00000639621 1154 ntTSL 5 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 ELAVL2-202ENST00000380110 3691 ntTSL 5 BASIC6.04□□□□□ -1.44
CHMP4AQ9BY43 ARHGAP42P3-201ENST00000443989 2508 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 AL391684.1-202ENST00000641293 1636 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 AC008549.2-201ENST00000333482 706 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 RNA5-8SP7-201ENST00000363443 155 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 RNU6-1005P-201ENST00000384519 107 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 RNU1-82P-201ENST00000390851 165 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 ENSAP1-201ENST00000392855 326 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 DSTNP4-201ENST00000399472 474 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 ATF1P1-201ENST00000406040 927 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 FABP7P1-201ENST00000424004 391 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 CKS1BP6-201ENST00000424932 240 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 OR51AB1P-201ENST00000429046 620 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 AC079168.2-201ENST00000453977 416 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 AC008379.1-201ENST00000463655 464 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 AC010245.1-201ENST00000511329 754 ntTSL 3 BASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 AC107463.1-202ENST00000514526 689 ntTSL 2 BASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 AF279873.1-201ENST00000523393 313 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 OR5BC1P-201ENST00000529327 739 ntBASIC6.03□□□□□ -1.44
CHMP4AQ9BY43 AC011611.5-201ENST00000552477 578 ntBASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms