Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 GSTA8P-201ENST00000404253 637 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 VDAC1P9-201ENST00000412766 841 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 RNA5SP208-201ENST00000516156 78 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 SNORA70.17-201ENST00000516449 133 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 AC084116.3-201ENST00000519123 429 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 AC133065.1-201ENST00000572017 575 ntTSL 3 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 AP001269.1-201ENST00000592820 528 ntTSL 4 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 AC010591.1-201ENST00000603941 649 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 AC104662.1-201ENST00000604448 511 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 AL390816.3-201ENST00000604527 1066 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 C4orf33-202ENST00000425929 1588 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 RANBP2-201ENST00000283195 11711 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 C3orf49-201ENST00000295896 1292 ntAPPRIS P5 TSL 2 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 FTLP6-201ENST00000355274 422 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 BX119904.3-201ENST00000428194 957 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 ZYG11AP1-201ENST00000430329 837 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 RPL7P24-201ENST00000493052 752 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 AC136777.1-201ENST00000517765 369 ntTSL 4 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 AL162274.2-201ENST00000614406 332 ntBASIC3.6□□□□□ -1.83
VPS13AQ96RL7 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 PJA2-202ENST00000361557 4645 ntAPPRIS P1 TSL 2 BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 NCOA1-201ENST00000288599 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 PLCL2-202ENST00000432376 3940 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
VPS13AQ96RL7 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 RNU4-82P-201ENST00000362443 140 ntBASIC3.59□□□□□ -1.83
VPS13AQ96RL7 RPA3-203ENST00000401447 414 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 AC008948.1-201ENST00000506058 325 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 AC006539.2-201ENST00000601729 572 ntBASIC3.59□□□□□ -1.83
VPS13AQ96RL7 AL354760.1-201ENST00000608357 643 ntBASIC3.59□□□□□ -1.83
VPS13AQ96RL7 AL157762.1-201ENST00000619612 415 ntBASIC3.59□□□□□ -1.83
VPS13AQ96RL7 MDM4-214ENST00000612738 9407 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 PARP11-203ENST00000427057 4406 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 ZNF808-201ENST00000359798 3600 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 OR2AH1P-201ENST00000425717 928 ntBASIC3.59□□□□□ -1.83
VPS13AQ96RL7 HCG2040054-201ENST00000435331 434 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 AL645931.1-201ENST00000439737 410 ntBASIC3.59□□□□□ -1.83
VPS13AQ96RL7 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 STMN1P2-201ENST00000508435 439 ntBASIC3.59□□□□□ -1.83
VPS13AQ96RL7 RPL23AP92-201ENST00000603609 255 ntBASIC3.59□□□□□ -1.83
VPS13AQ96RL7 AC008966.2-201ENST00000606157 453 ntBASIC3.59□□□□□ -1.83
VPS13AQ96RL7 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 ANGPTL1-202ENST00000367629 2289 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
VPS13AQ96RL7 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 AC007529.1-201ENST00000418574 2178 ntBASIC3.59□□□□□ -1.84
VPS13AQ96RL7 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 MIR133A2-201ENST00000347538 102 ntBASIC3.59□□□□□ -1.84
VPS13AQ96RL7 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 AL121594.4-201ENST00000556211 1196 ntBASIC3.59□□□□□ -1.84
VPS13AQ96RL7 AL157394.1-201ENST00000562983 1224 ntBASIC3.59□□□□□ -1.84
VPS13AQ96RL7 AC103987.2-201ENST00000583436 417 ntTSL 2 BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 AC093732.2-201ENST00000607950 274 ntBASIC3.59□□□□□ -1.84
VPS13AQ96RL7 CD36-221ENST00000534394 1741 ntTSL 2 BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
VPS13AQ96RL7 C16orf87-202ENST00000394806 6640 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 ZNF807-201ENST00000328088 1707 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 RPS27AP15-201ENST00000447672 466 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AC117465.1-201ENST00000457125 522 ntTSL 3 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 HMGB3P16-201ENST00000508037 287 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AC093755.1-201ENST00000512950 1023 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 MIR4276-201ENST00000584832 70 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AL161912.2-201ENST00000565707 3007 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AC093535.2-201ENST00000624769 2326 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 RNU1-140P-201ENST00000365040 165 ntBASIC3.58□□□□□ -1.84
VPS13AQ96RL7 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC3.58□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 78.1 ms