Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 CYCSP52-201ENST00000422857 310 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RPL12P17-201ENST00000432393 498 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AL627308.1-201ENST00000435693 821 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC234771.4-201ENST00000441416 730 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC079781.2-201ENST00000446424 169 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 PHKA2-AS1-202ENST00000452900 656 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RPL31P11-202ENST00000454082 372 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RNU7-63P-201ENST00000459054 62 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC104164.1-201ENST00000460282 590 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RPSAP24-201ENST00000461543 873 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC233702.1-201ENST00000482905 502 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC092824.1-201ENST00000483524 576 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 H3F3AP3-201ENST00000497682 407 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 NENFP3-201ENST00000503735 313 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC093870.1-201ENST00000506837 213 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RNU6-27P-201ENST00000516146 107 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 SNORA40.12-201ENST00000516329 111 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RNU6-410P-201ENST00000517006 107 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC100784.1-201ENST00000522790 310 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC131935.1-201ENST00000524621 333 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RAB30-209ENST00000532548 644 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC025419.1-204ENST00000539653 745 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 PCED1B-AS1-203ENST00000547626 420 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 PYM1-205ENST00000547925 499 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AL845552.1-201ENST00000556820 323 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC026956.1-201ENST00000558741 396 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 LINC01290-201ENST00000566787 502 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC055876.1-202ENST00000567053 138 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RPS3AP23-202ENST00000574601 686 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RN7SL208P-201ENST00000577964 296 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 MAPKAPK5-AS1-205ENST00000590479 543 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 RPL7AP69-201ENST00000595306 806 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AL589863.1-201ENST00000595383 631 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC012175.1-201ENST00000603755 531 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC245517.5-201ENST00000611529 162 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AL445584.2-201ENST00000614030 616 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AP003400.5-201ENST00000624827 617 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC091925.2-201ENST00000625059 256 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AL596275.2-204ENST00000641628 552 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AL596275.2-206ENST00000641957 626 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 INTS6-203ENST00000442263 15428 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 LINC00320-204ENST00000437238 2004 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AF121898.1-201ENST00000440763 1860 ntTSL 5 BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
CCDC140Q96MF4 AC008758.3-201ENST00000507003 1829 ntBASIC5.07□□□□□ -1.6
CCDC140Q96MF4 SOHLH2-202ENST00000379881 2193 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 RBPJP7-201ENST00000442803 1447 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 RBPJP5-201ENST00000449433 1447 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 BDNF-203ENST00000395978 3988 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 ZNF227-202ENST00000391961 2993 ntTSL 4 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 PHKBP1-201ENST00000450951 1951 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 OPALIN-201ENST00000371172 3557 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 RARB-204ENST00000458646 2590 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 TINAG-202ENST00000370864 692 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AKAP14-202ENST00000371422 412 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 RNU6-278P-201ENST00000390945 109 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 ARSFP1-201ENST00000398758 477 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 MIR1266-201ENST00000408125 84 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 RNA5SP118-201ENST00000410385 109 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 RPL30P3-201ENST00000424262 333 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 RPL12P12-201ENST00000424633 501 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AL589794.1-201ENST00000424971 390 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
CCDC140Q96MF4 RPL12P16-201ENST00000431098 498 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AL353597.2-202ENST00000434901 373 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AL451136.1-201ENST00000435399 325 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 RPL12P46-201ENST00000436610 195 ntBASIC5.06□□□□□ -1.6
CCDC140Q96MF4 AL139220.2-214ENST00000437643 614 ntTSL 3 BASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 91 ms