Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AP000756.2-201ENST00000624168 2567 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 AC009951.1-201ENST00000623674 2614 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 AC008549.2-201ENST00000333482 706 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 BMS1P3-201ENST00000372011 932 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 RNU6-225P-201ENST00000384613 103 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 TMSB10P2-201ENST00000416049 131 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 AC106883.1-201ENST00000418805 562 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 GAS5-208ENST00000425771 242 ntTSL 3 BASIC4.86□□□□□ -1.63
USP41Q3LFD5 RPS12P10-201ENST00000427031 377 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC4.86□□□□□ -1.63
USP41Q3LFD5 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 AC009963.2-201ENST00000453431 138 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 DUXAP8-207ENST00000456786 622 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC4.86□□□□□ -1.63
USP41Q3LFD5 AL161747.1-201ENST00000480068 358 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 TRAV31-201ENST00000502780 342 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 AC010460.2-201ENST00000509054 677 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.86□□□□□ -1.63
USP41Q3LFD5 snoU109.6-201ENST00000516831 118 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 IGHVIII-2-1-201ENST00000518843 291 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC4.86□□□□□ -1.63
USP41Q3LFD5 LINC02399-201ENST00000547094 400 ntTSL 2 BASIC4.86□□□□□ -1.63
USP41Q3LFD5 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC4.86□□□□□ -1.63
USP41Q3LFD5 AL158801.3-201ENST00000555514 363 ntTSL 3 BASIC4.86□□□□□ -1.63
USP41Q3LFD5 AL049838.1-201ENST00000563647 981 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.86□□□□□ -1.63
USP41Q3LFD5 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC4.86□□□□□ -1.63
USP41Q3LFD5 AL022067.1-201ENST00000602426 454 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 AC233280.2-201ENST00000603917 1070 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 AC023813.4-201ENST00000607580 580 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 DUXAP10-204ENST00000612052 616 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 AC138907.10-201ENST00000623708 983 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 CASP1-217ENST00000640184 327 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 CNTN5-207ENST00000527185 4303 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 GALNT13-202ENST00000409237 2591 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.86□□□□□ -1.63
USP41Q3LFD5 AL359922.3-201ENST00000624779 1670 ntBASIC4.86□□□□□ -1.63
USP41Q3LFD5 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
USP41Q3LFD5 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USP41Q3LFD5 FAM35A-202ENST00000298786 3614 ntTSL 5 BASIC4.85□□□□□ -1.63
USP41Q3LFD5 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
USP41Q3LFD5 MYBPC1-204ENST00000452455 3861 ntAPPRIS ALT2 TSL 2 BASIC4.85□□□□□ -1.63
USP41Q3LFD5 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP41Q3LFD5 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP41Q3LFD5 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP41Q3LFD5 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
USP41Q3LFD5 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP41Q3LFD5 RNU5E-10P-201ENST00000363506 118 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USP41Q3LFD5 AP001324.1-201ENST00000428553 399 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 RPL7P29-201ENST00000437151 728 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 ARL4AP3-201ENST00000441452 574 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 ARL5AP2-201ENST00000444698 533 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 CCNB1IP1P3-201ENST00000454702 829 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 RPL7AP52-201ENST00000458096 790 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 RPL21P6-201ENST00000479171 504 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 OR8G5-201ENST00000524943 1041 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.85□□□□□ -1.63
USP41Q3LFD5 MIR4509-3-201ENST00000578671 94 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 MIR4509-2-201ENST00000583920 94 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 MIR3138-201ENST00000585238 82 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.85□□□□□ -1.63
USP41Q3LFD5 ZNF92P3-201ENST00000596594 954 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.85□□□□□ -1.63
USP41Q3LFD5 Z82195.1-201ENST00000604558 398 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.85□□□□□ -1.63
USP41Q3LFD5 AC114781.5-201ENST00000615297 108 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 FRG1HP-204ENST00000617940 757 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 MIR4509-1-201ENST00000618224 94 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 AC015804.1-201ENST00000622935 435 ntBASIC4.85□□□□□ -1.63
USP41Q3LFD5 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.85□□□□□ -1.63
USP41Q3LFD5 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC4.85□□□□□ -1.63
USP41Q3LFD5 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
USP41Q3LFD5 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP41Q3LFD5 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
USP41Q3LFD5 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
USP41Q3LFD5 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
USP41Q3LFD5 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.63
USP41Q3LFD5 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
USP41Q3LFD5 CASC19-206ENST00000641028 1430 ntBASIC4.84□□□□□ -1.63
USP41Q3LFD5 FAM114A2-210ENST00000520313 1394 ntTSL 2 BASIC4.84□□□□□ -1.63
USP41Q3LFD5 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
USP41Q3LFD5 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.84□□□□□ -1.63
USP41Q3LFD5 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
USP41Q3LFD5 MTCO2P8-201ENST00000412213 658 ntBASIC4.84□□□□□ -1.63
USP41Q3LFD5 P4HA2-AS1-201ENST00000417667 839 ntTSL 3 BASIC4.84□□□□□ -1.63
USP41Q3LFD5 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.84□□□□□ -1.63
USP41Q3LFD5 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC4.84□□□□□ -1.63
USP41Q3LFD5 AC246680.2-201ENST00000422106 389 ntBASIC4.84□□□□□ -1.63
USP41Q3LFD5 GTF2IP2-201ENST00000424290 697 ntBASIC4.84□□□□□ -1.63
USP41Q3LFD5 MTCYBP32-201ENST00000427945 1084 ntBASIC4.84□□□□□ -1.63
USP41Q3LFD5 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms