Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 YWHAQP9-201ENST00000445891 512 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 ZBTB8OS-205ENST00000465588 548 ntTSL 2 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 RPL23AP71-201ENST00000470966 469 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AP002812.1-201ENST00000495378 474 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 RN7SKP46-201ENST00000515942 234 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 TBCA-207ENST00000520039 157 ntTSL 3 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC008562.1-201ENST00000521763 330 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 COX6B1P6-201ENST00000522347 255 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC023796.1-201ENST00000536131 670 ntTSL 3 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AL132857.1-201ENST00000555180 708 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 MTCYBP23-201ENST00000558717 1102 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 CSNK1A1P1-202ENST00000563423 981 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 CYP2C60P-201ENST00000566088 139 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC090751.1-201ENST00000566966 267 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC022884.2-201ENST00000578535 580 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC009948.4-201ENST00000604692 675 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AL157392.4-201ENST00000609756 345 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC023043.4-201ENST00000612081 449 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 PART1_2.1-201ENST00000612397 250 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 MIR6853-201ENST00000619642 74 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC109454.4-201ENST00000623411 649 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AL078595.3-201ENST00000623815 1166 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC017104.5-201ENST00000637647 639 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL28A1Q2UY09 SAMMSON-213ENST00000641336 1521 ntBASIC4.72□□□□□ -1.65
COL28A1Q2UY09 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
COL28A1Q2UY09 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.71□□□□□ -1.65
COL28A1Q2UY09 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
COL28A1Q2UY09 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
COL28A1Q2UY09 AC099654.2-201ENST00000433031 1980 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AC009951.1-201ENST00000623674 2614 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AL590240.1-201ENST00000334118 313 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 RN7SKP224-201ENST00000364140 325 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 RNU4-51P-201ENST00000364206 140 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 OR52E6-202ENST00000379946 954 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 RNU6-77P-201ENST00000410554 91 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 BX510359.2-201ENST00000417920 305 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 EFCAB14-AS1-201ENST00000418985 491 ntTSL 3 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AC027644.1-201ENST00000419595 298 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 LANCL1-AS1-202ENST00000420418 476 ntTSL 3 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 MTND2P5-201ENST00000432656 1006 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AC005154.2-201ENST00000438110 379 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 LINC00302-201ENST00000444515 302 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AC005002.1-201ENST00000447458 540 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 BX842559.2-201ENST00000451418 605 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 OFD1P3Y-201ENST00000453312 783 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 BX248409.1-201ENST00000455497 255 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AC022795.1-201ENST00000473808 480 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AC079203.1-201ENST00000487972 404 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 ARL4AP1-201ENST00000503220 705 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AC097173.1-201ENST00000505862 819 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AC113420.1-201ENST00000507903 571 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 HMGB3P16-201ENST00000508037 287 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 OR8G5-201ENST00000524943 1041 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 OR8K4P-201ENST00000534608 872 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AC006065.3-201ENST00000541769 419 ntTSL 5 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AL121834.1-201ENST00000572284 509 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 GMFG-202ENST00000594700 397 ntTSL 2 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 NTAN1P1-201ENST00000603150 646 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 PSMA6P4-201ENST00000603247 718 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AL365400.2-201ENST00000605604 902 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 AC123767.1-202ENST00000620407 817 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 PDCD6IPP1-202ENST00000622242 1064 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC4.71□□□□□ -1.66
COL28A1Q2UY09 ATE1-AS1-202ENST00000636460 506 ntBASIC4.71□□□□□ -1.66
COL28A1Q2UY09 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 103 ms