Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SCN4AP35499 MIR1289-1-201ENST00000408836 144 ntBASIC4.65□□□□□ -1.66
SCN4AP35499 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.65□□□□□ -1.66
SCN4AP35499 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC4.65□□□□□ -1.66
SCN4AP35499 RN7SL809P-201ENST00000482040 297 ntBASIC4.65□□□□□ -1.66
SCN4AP35499 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.65□□□□□ -1.66
SCN4AP35499 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC4.65□□□□□ -1.66
SCN4AP35499 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC4.65□□□□□ -1.66
SCN4AP35499 AC233280.2-201ENST00000603917 1070 ntBASIC4.65□□□□□ -1.66
SCN4AP35499 AC115621.1-201ENST00000604653 858 ntBASIC4.65□□□□□ -1.66
SCN4AP35499 SCARNA15.3-201ENST00000626315 122 ntBASIC4.65□□□□□ -1.66
SCN4AP35499 SCARNA4.1-201ENST00000628597 123 ntBASIC4.65□□□□□ -1.66
SCN4AP35499 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC4.65□□□□□ -1.66
SCN4AP35499 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
SCN4AP35499 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SCN4AP35499 DNAH8-205ENST00000449981 12940 ntTSL 5 BASIC4.65□□□□□ -1.67
SCN4AP35499 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
SCN4AP35499 RNU1-33P-201ENST00000364249 162 ntBASIC4.65□□□□□ -1.67
SCN4AP35499 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.65□□□□□ -1.67
SCN4AP35499 DPY19L1P2-201ENST00000426647 915 ntBASIC4.65□□□□□ -1.67
SCN4AP35499 SKP1P3-201ENST00000429280 487 ntBASIC4.65□□□□□ -1.67
SCN4AP35499 HIGD1AP4-201ENST00000430194 280 ntBASIC4.65□□□□□ -1.67
SCN4AP35499 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.65□□□□□ -1.67
SCN4AP35499 AP001486.1-201ENST00000463339 476 ntBASIC4.65□□□□□ -1.67
SCN4AP35499 AL136126.1-201ENST00000473603 402 ntBASIC4.65□□□□□ -1.67
SCN4AP35499 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.65□□□□□ -1.67
SCN4AP35499 AC090506.1-201ENST00000583089 572 ntTSL 4 BASIC4.65□□□□□ -1.67
SCN4AP35499 AC079880.2-201ENST00000603790 1213 ntBASIC4.65□□□□□ -1.67
SCN4AP35499 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.65□□□□□ -1.67
SCN4AP35499 AC120036.2-201ENST00000509729 1474 ntBASIC4.64□□□□□ -1.67
SCN4AP35499 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SCN4AP35499 AL356274.2-201ENST00000624379 3752 ntBASIC4.64□□□□□ -1.67
SCN4AP35499 ZNF43-210ENST00000598381 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC4.64□□□□□ -1.67
SCN4AP35499 HSPD1P14-201ENST00000432666 1618 ntBASIC4.64□□□□□ -1.67
SCN4AP35499 CDY11P-201ENST00000447168 1651 ntBASIC4.64□□□□□ -1.67
SCN4AP35499 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.64□□□□□ -1.67
SCN4AP35499 RFX7-201ENST00000559447 10426 ntAPPRIS P5 TSL 5 BASIC4.64□□□□□ -1.67
SCN4AP35499 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.64□□□□□ -1.67
SCN4AP35499 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SCN4AP35499 RPL21P10-201ENST00000463521 490 ntBASIC4.64□□□□□ -1.67
SCN4AP35499 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.64□□□□□ -1.67
SCN4AP35499 AC010468.2-201ENST00000511981 438 ntTSL 2 BASIC4.64□□□□□ -1.67
SCN4AP35499 RNU7-143P-201ENST00000516781 65 ntBASIC4.64□□□□□ -1.67
SCN4AP35499 AC090151.1-201ENST00000520784 730 ntBASIC4.64□□□□□ -1.67
SCN4AP35499 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.64□□□□□ -1.67
SCN4AP35499 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.64□□□□□ -1.67
SCN4AP35499 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.64□□□□□ -1.67
SCN4AP35499 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SCN4AP35499 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
SCN4AP35499 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC4.64□□□□□ -1.67
SCN4AP35499 AL078595.2-201ENST00000605309 1780 ntBASIC4.64□□□□□ -1.67
SCN4AP35499 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
SCN4AP35499 AC027290.2-201ENST00000623210 18662 ntBASIC4.64□□□□□ -1.67
SCN4AP35499 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.63□□□□□ -1.67
SCN4AP35499 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
SCN4AP35499 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SCN4AP35499 SNORD35B-201ENST00000363660 87 ntBASIC4.63□□□□□ -1.67
SCN4AP35499 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.63□□□□□ -1.67
SCN4AP35499 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SCN4AP35499 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
SCN4AP35499 AC005300.1-201ENST00000428401 373 ntBASIC4.63□□□□□ -1.67
SCN4AP35499 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.63□□□□□ -1.67
SCN4AP35499 EIF4A1P11-201ENST00000451239 222 ntBASIC4.63□□□□□ -1.67
SCN4AP35499 AC026784.1-201ENST00000507986 352 ntBASIC4.63□□□□□ -1.67
SCN4AP35499 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.63□□□□□ -1.67
SCN4AP35499 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC4.63□□□□□ -1.67
SCN4AP35499 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.63□□□□□ -1.67
SCN4AP35499 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC4.63□□□□□ -1.67
SCN4AP35499 AC015922.4-201ENST00000612568 690 ntBASIC4.63□□□□□ -1.67
SCN4AP35499 Z82217.1-201ENST00000625157 8149 ntBASIC4.63□□□□□ -1.67
SCN4AP35499 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.63□□□□□ -1.67
SCN4AP35499 FP236241.1-201ENST00000623374 7632 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SCN4AP35499 CU633967.1-211ENST00000624444 7628 ntTSL 1 (best) BASIC4.63□□□□□ -1.67
SCN4AP35499 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC4.63□□□□□ -1.67
SCN4AP35499 RNU1-108P-201ENST00000362556 161 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 AC234772.1-201ENST00000377927 937 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC4.62□□□□□ -1.67
SCN4AP35499 AL512649.1-201ENST00000428997 581 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 PRELID3BP10-201ENST00000431957 584 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SCN4AP35499 RPL37P3-201ENST00000456825 293 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.62□□□□□ -1.67
SCN4AP35499 AC025445.1-201ENST00000502728 300 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC4.62□□□□□ -1.67
SCN4AP35499 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC4.62□□□□□ -1.67
SCN4AP35499 CFL2-206ENST00000556161 546 ntTSL 4 BASIC4.62□□□□□ -1.67
SCN4AP35499 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC4.62□□□□□ -1.67
SCN4AP35499 MTND6P33-201ENST00000571794 183 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 RPL23AP87-202ENST00000573039 466 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 AC008759.1-201ENST00000589783 983 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 AL137849.1-201ENST00000604767 169 ntBASIC4.62□□□□□ -1.67
SCN4AP35499 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC4.62□□□□□ -1.67
SCN4AP35499 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SCN4AP35499 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
SCN4AP35499 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC4.62□□□□□ -1.67
SCN4AP35499 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC4.62□□□□□ -1.67
SCN4AP35499 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.62□□□□□ -1.67
SCN4AP35499 AC110760.2-201ENST00000508031 2546 ntTSL 2 BASIC4.62□□□□□ -1.67
SCN4AP35499 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms