Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC019330.1-202ENST00000440609 504 ntTSL 4 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 RPS26P30-201ENST00000443431 335 ntBASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 SCEL-AS1-201ENST00000456280 493 ntTSL 3 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 AC093755.1-201ENST00000512950 1023 ntBASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 IGKV3OR22-2-201ENST00000517943 313 ntBASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 IGJP1-201ENST00000522682 475 ntBASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 CYCSP29-201ENST00000533731 318 ntBASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 AL035071.2-201ENST00000565572 459 ntTSL 3 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 AC068408.2-201ENST00000584566 439 ntTSL 3 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 AC008764.2-201ENST00000597226 376 ntTSL 5 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 AC007671.2-201ENST00000637344 619 ntBASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 ADGRL2-209ENST00000370727 5164 ntTSL 5 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 CYP1D1P-201ENST00000416662 1433 ntBASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 AP005901.5-201ENST00000545779 1796 ntBASIC6.06□□□□□ -1.44
SMC1BQ8NDV3 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AL360270.2-201ENST00000562952 5985 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 RNU1-136P-201ENST00000384181 164 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 SNORA5.1-201ENST00000384275 131 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 SNORA70C-201ENST00000384538 135 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 OR6C69P-201ENST00000394268 893 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 ATP5F1P3-201ENST00000397213 657 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 SUMO1-205ENST00000409205 534 ntTSL 2 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AF186996.5-201ENST00000418098 904 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 USP9YP26-201ENST00000421008 661 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 RPL21P43-201ENST00000425440 472 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 MTND1P32-201ENST00000433043 938 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC090617.2-201ENST00000433167 404 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 RPL12P18-201ENST00000437175 325 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC004160.1-211ENST00000445839 565 ntTSL 4 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AL354714.3-201ENST00000447284 493 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 SLC25A18P1-201ENST00000449385 454 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AL935212.3-201ENST00000450729 284 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC104971.1-201ENST00000495117 578 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 SCARNA13-201ENST00000516672 275 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 MTERF3-203ENST00000522822 1148 ntTSL 2 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 OR8Q1P-201ENST00000526467 655 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC016526.2-201ENST00000554225 520 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC090888.1-201ENST00000561335 1141 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC091563.1-202ENST00000574086 522 ntTSL 5 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC023394.2-201ENST00000581987 792 ntTSL 5 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC009027.1-201ENST00000604510 479 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC012557.2-201ENST00000605919 418 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC080013.3-201ENST00000606839 578 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 AC092140.2-201ENST00000618027 521 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SMC1BQ8NDV3 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC6.05□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms