Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC3.86□□□□□ -1.79
SKA3Q8IX90 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AP001486.2-201ENST00000561652 5113 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SKA3Q8IX90 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 MIR331-201ENST00000362302 94 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 RNA5SP447-201ENST00000363749 119 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 RPS27AP11-201ENST00000402798 447 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AL138878.1-201ENST00000405131 347 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 SNORA74C-2-201ENST00000411179 201 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SKA3Q8IX90 RPL6P29-201ENST00000414863 865 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 SEC63P1-201ENST00000425785 1258 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 RPL7P4-203ENST00000430239 730 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC114495.1-201ENST00000441274 436 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SKA3Q8IX90 HMGB1P26-201ENST00000452520 628 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 RNU7-27P-201ENST00000459281 62 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 RPL23AP71-201ENST00000470966 469 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC013356.1-201ENST00000489027 564 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 RPS27AP16-201ENST00000492222 470 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 PARP4P3-201ENST00000510265 317 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC091180.4-201ENST00000511322 245 ntTSL 2 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 RNU6-1004P-201ENST00000516584 111 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SKA3Q8IX90 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC092851.1-201ENST00000535964 478 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC093014.1-201ENST00000548926 724 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AL049870.4-201ENST00000555741 486 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC018552.3-201ENST00000567416 561 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 CYP4A43P-201ENST00000568156 121 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC068790.4-201ENST00000602474 263 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AL671309.1-201ENST00000603750 544 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 HMGB1P50-201ENST00000605814 607 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 AP003497.2-201ENST00000624220 967 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 LINC01002-236ENST00000634022 378 ntTSL 5 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC139713.2-214ENST00000642059 1811 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 GALNT11-203ENST00000422997 2371 ntTSL 5 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 ACTR3BP2-202ENST00000623630 1338 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC009313.2-201ENST00000417893 1941 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AADACL2-201ENST00000356517 1487 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.85□□□□□ -1.79
SKA3Q8IX90 SCN3A-201ENST00000283254 9091 ntAPPRIS P3 TSL 1 (best) BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC024341.1-201ENST00000526444 1552 ntBASIC3.85□□□□□ -1.79
SKA3Q8IX90 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
SKA3Q8IX90 AC134882.1-201ENST00000603738 1676 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SKA3Q8IX90 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SKA3Q8IX90 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SKA3Q8IX90 MGAT4A-204ENST00000414521 3709 ntTSL 2 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SKA3Q8IX90 OR5P1P-201ENST00000299512 925 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
SKA3Q8IX90 RNA5SP22-201ENST00000365393 109 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 VN1R8P-201ENST00000407739 893 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 RNA5SP498-201ENST00000411342 120 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 AC048351.1-201ENST00000420064 602 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 MORF4L1P7-201ENST00000426038 703 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AL158073.1-201ENST00000426848 1104 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AL390879.2-203ENST00000426943 1121 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 DNAJC19P7-201ENST00000428811 344 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AC011998.1-201ENST00000433403 117 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 RPL12P46-201ENST00000436610 195 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 HLA-N-201ENST00000437516 135 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 PPIAP17-201ENST00000438507 471 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 ELOCP8-201ENST00000439309 332 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 ELOCP15-201ENST00000442090 332 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AL122008.1-201ENST00000456078 452 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 RPL35AP15-201ENST00000468042 339 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 RN7SL812P-201ENST00000493791 279 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 AC025459.1-201ENST00000504072 156 ntBASIC3.84□□□□□ -1.79
SKA3Q8IX90 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.84□□□□□ -1.79
SKA3Q8IX90 MTND3P24-201ENST00000506306 329 ntBASIC3.84□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms