Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AC133552.5-201ENST00000604266 540 ntBASIC4.67□□□□□ -1.66
NUP98P52948 MESTIT1_2.1-201ENST00000616328 235 ntBASIC4.67□□□□□ -1.66
NUP98P52948 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.67□□□□□ -1.66
NUP98P52948 ATE1-AS1-202ENST00000636460 506 ntBASIC4.67□□□□□ -1.66
NUP98P52948 LCOR-204ENST00000371103 10342 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
NUP98P52948 AC027290.2-201ENST00000623210 18662 ntBASIC4.66□□□□□ -1.66
NUP98P52948 SMG1P4-204ENST00000523028 4131 ntBASIC4.66□□□□□ -1.66
NUP98P52948 TCP1P3-201ENST00000414406 1498 ntBASIC4.66□□□□□ -1.66
NUP98P52948 KIF14-202ENST00000614960 6838 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP98P52948 AC007068.1-201ENST00000396690 844 ntBASIC4.66□□□□□ -1.66
NUP98P52948 KATNBL1P2-201ENST00000433311 835 ntBASIC4.66□□□□□ -1.66
NUP98P52948 SNORA71B-202ENST00000439232 272 ntBASIC4.66□□□□□ -1.66
NUP98P52948 AL360013.2-201ENST00000440104 807 ntTSL 2 BASIC4.66□□□□□ -1.66
NUP98P52948 VN1R25P-201ENST00000443385 738 ntBASIC4.66□□□□□ -1.66
NUP98P52948 VN1R40P-201ENST00000455196 941 ntBASIC4.66□□□□□ -1.66
NUP98P52948 LINC01088-208ENST00000511895 795 ntTSL 2 BASIC4.66□□□□□ -1.66
NUP98P52948 TCP11X3P-202ENST00000514289 1254 ntBASIC4.66□□□□□ -1.66
NUP98P52948 SNORA70.17-201ENST00000516449 133 ntBASIC4.66□□□□□ -1.66
NUP98P52948 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC4.66□□□□□ -1.66
NUP98P52948 AC078889.1-201ENST00000536412 523 ntTSL 2 BASIC4.66□□□□□ -1.66
NUP98P52948 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC4.66□□□□□ -1.66
NUP98P52948 TIMM9-206ENST00000555593 796 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP98P52948 AL390816.3-201ENST00000604527 1066 ntBASIC4.66□□□□□ -1.66
NUP98P52948 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP98P52948 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP98P52948 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP98P52948 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
NUP98P52948 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
NUP98P52948 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
NUP98P52948 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC4.65□□□□□ -1.66
NUP98P52948 RNA5SP52-201ENST00000362448 134 ntBASIC4.65□□□□□ -1.66
NUP98P52948 RNA5SP267-201ENST00000364893 126 ntBASIC4.65□□□□□ -1.66
NUP98P52948 AC069285.2-201ENST00000440210 275 ntBASIC4.65□□□□□ -1.66
NUP98P52948 SETP4-201ENST00000455717 868 ntBASIC4.65□□□□□ -1.66
NUP98P52948 APOOP2-201ENST00000461561 539 ntBASIC4.65□□□□□ -1.66
NUP98P52948 RPL21P10-201ENST00000463521 490 ntBASIC4.65□□□□□ -1.66
NUP98P52948 AK5-208ENST00000478255 556 ntTSL 2 BASIC4.65□□□□□ -1.66
NUP98P52948 WBP1LP4-201ENST00000505043 344 ntBASIC4.65□□□□□ -1.66
NUP98P52948 AC108866.1-202ENST00000511064 573 ntTSL 4 BASIC4.65□□□□□ -1.66
NUP98P52948 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.65□□□□□ -1.66
NUP98P52948 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.65□□□□□ -1.66
NUP98P52948 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.65□□□□□ -1.66
NUP98P52948 AC010547.3-201ENST00000569271 440 ntTSL 2 BASIC4.65□□□□□ -1.66
NUP98P52948 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.65□□□□□ -1.67
NUP98P52948 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
NUP98P52948 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.67
NUP98P52948 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
NUP98P52948 RN7SKP177-201ENST00000410567 355 ntBASIC4.65□□□□□ -1.67
NUP98P52948 UBE2Q2P12-201ENST00000414573 204 ntBASIC4.65□□□□□ -1.67
NUP98P52948 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.65□□□□□ -1.67
NUP98P52948 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC4.65□□□□□ -1.67
NUP98P52948 AC005300.1-201ENST00000428401 373 ntBASIC4.65□□□□□ -1.67
NUP98P52948 AL590302.1-201ENST00000431017 359 ntTSL 2 BASIC4.65□□□□□ -1.67
NUP98P52948 CASP1-203ENST00000446369 948 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
NUP98P52948 AC069240.1-201ENST00000548774 375 ntBASIC4.65□□□□□ -1.67
NUP98P52948 AC023161.2-201ENST00000551218 780 ntBASIC4.65□□□□□ -1.67
NUP98P52948 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.65□□□□□ -1.67
NUP98P52948 AC012603.1-201ENST00000606424 528 ntBASIC4.65□□□□□ -1.67
NUP98P52948 AP000553.6-201ENST00000641242 118 ntBASIC4.65□□□□□ -1.67
NUP98P52948 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP98P52948 AC093535.2-201ENST00000624769 2326 ntBASIC4.64□□□□□ -1.67
NUP98P52948 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP98P52948 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP98P52948 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC4.64□□□□□ -1.67
NUP98P52948 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC4.64□□□□□ -1.67
NUP98P52948 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP98P52948 ATP5JP1-201ENST00000431631 322 ntBASIC4.64□□□□□ -1.67
NUP98P52948 AC026427.2-201ENST00000506228 536 ntBASIC4.64□□□□□ -1.67
NUP98P52948 RANP9-201ENST00000519957 271 ntBASIC4.64□□□□□ -1.67
NUP98P52948 CT45A3-201ENST00000597510 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP98P52948 AL031985.2-201ENST00000600955 480 ntBASIC4.64□□□□□ -1.67
NUP98P52948 AL160281.1-201ENST00000605307 311 ntBASIC4.64□□□□□ -1.67
NUP98P52948 CT45A2-201ENST00000605791 1076 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP98P52948 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP98P52948 ING3-201ENST00000315870 3777 ntAPPRIS P1 TSL 1 (best) BASIC4.64□□□□□ -1.67
NUP98P52948 DDX18P6-201ENST00000450119 1997 ntBASIC4.64□□□□□ -1.67
NUP98P52948 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.64□□□□□ -1.67
NUP98P52948 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NUP98P52948 IPO8P1-201ENST00000455509 3109 ntBASIC4.63□□□□□ -1.67
NUP98P52948 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.63□□□□□ -1.67
NUP98P52948 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC4.63□□□□□ -1.67
NUP98P52948 RNU1-108P-201ENST00000362556 161 ntBASIC4.63□□□□□ -1.67
NUP98P52948 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.63□□□□□ -1.67
NUP98P52948 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NUP98P52948 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC4.63□□□□□ -1.67
NUP98P52948 RNU6-316P-201ENST00000391027 107 ntBASIC4.63□□□□□ -1.67
NUP98P52948 ELOCP8-201ENST00000439309 332 ntBASIC4.63□□□□□ -1.67
NUP98P52948 ELOCP15-201ENST00000442090 332 ntBASIC4.63□□□□□ -1.67
NUP98P52948 AL591503.2-201ENST00000442314 1005 ntBASIC4.63□□□□□ -1.67
NUP98P52948 SETD6P1-201ENST00000444575 317 ntBASIC4.63□□□□□ -1.67
NUP98P52948 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.63□□□□□ -1.67
NUP98P52948 AC087672.2-201ENST00000522498 429 ntTSL 2 BASIC4.63□□□□□ -1.67
NUP98P52948 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.63□□□□□ -1.67
NUP98P52948 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC4.63□□□□□ -1.67
NUP98P52948 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.63□□□□□ -1.67
NUP98P52948 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC4.63□□□□□ -1.67
NUP98P52948 OR7A8P-201ENST00000595427 913 ntBASIC4.63□□□□□ -1.67
NUP98P52948 CNTN5-212ENST00000619298 5734 ntTSL 5 BASIC4.63□□□□□ -1.67
NUP98P52948 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.63□□□□□ -1.67
NUP98P52948 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.63□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 155.2 ms