Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL18A1P39060 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.92□□□□□ -1.62
COL18A1P39060 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.92□□□□□ -1.62
COL18A1P39060 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC4.91□□□□□ -1.62
COL18A1P39060 KCNJ6-201ENST00000609713 19645 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL18A1P39060 AL365440.1-201ENST00000436135 2167 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 NPM1P37-201ENST00000403105 874 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 NPM1P25-201ENST00000429734 854 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.91□□□□□ -1.62
COL18A1P39060 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.91□□□□□ -1.62
COL18A1P39060 PPP1R11P1-201ENST00000486095 376 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 AC024224.1-201ENST00000538284 609 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 IGKV2OR2-8-201ENST00000558710 300 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC4.91□□□□□ -1.62
COL18A1P39060 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
COL18A1P39060 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
COL18A1P39060 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
COL18A1P39060 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL18A1P39060 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.91□□□□□ -1.62
COL18A1P39060 CDY3P-201ENST00000454543 1618 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC4.91□□□□□ -1.62
COL18A1P39060 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
COL18A1P39060 MIR128-1-201ENST00000384921 82 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 HSFY4P-201ENST00000415994 1181 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 OR51A6P-201ENST00000418680 1004 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 OSTCP5-201ENST00000425293 453 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 HLA-N-201ENST00000437516 135 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 Z75741.1-201ENST00000446793 314 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 RN7SL585P-201ENST00000470538 280 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 AC093663.1-201ENST00000497190 394 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 AC090136.1-201ENST00000520009 240 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 LINC01232-201ENST00000625254 836 ntTSL 5 BASIC4.91□□□□□ -1.62
COL18A1P39060 AC010300.1-201ENST00000600671 5134 ntBASIC4.91□□□□□ -1.62
COL18A1P39060 UBE3AP2-201ENST00000429033 2259 ntBASIC4.9□□□□□ -1.62
COL18A1P39060 AP000432.2-201ENST00000624164 2048 ntBASIC4.9□□□□□ -1.62
COL18A1P39060 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
COL18A1P39060 OR2L3-202ENST00000641161 2830 ntAPPRIS P1 BASIC4.9□□□□□ -1.62
COL18A1P39060 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.9□□□□□ -1.62
COL18A1P39060 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL18A1P39060 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL18A1P39060 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL18A1P39060 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
COL18A1P39060 IL6ST-212ENST00000522633 1878 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL18A1P39060 AC096644.3-201ENST00000416788 338 ntBASIC4.9□□□□□ -1.63
COL18A1P39060 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.9□□□□□ -1.63
COL18A1P39060 AL591363.1-201ENST00000450091 483 ntBASIC4.9□□□□□ -1.63
COL18A1P39060 AC010285.3-201ENST00000511668 676 ntBASIC4.9□□□□□ -1.63
COL18A1P39060 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC4.9□□□□□ -1.63
COL18A1P39060 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.9□□□□□ -1.63
COL18A1P39060 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC4.9□□□□□ -1.63
COL18A1P39060 AL157786.1-204ENST00000594870 506 ntTSL 3 BASIC4.9□□□□□ -1.63
COL18A1P39060 AC138965.3-201ENST00000623875 498 ntBASIC4.9□□□□□ -1.63
COL18A1P39060 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.9□□□□□ -1.63
COL18A1P39060 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL18A1P39060 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL18A1P39060 DCN-201ENST00000052754 7156 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL18A1P39060 GPRC6A-203ENST00000530250 2310 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
COL18A1P39060 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
COL18A1P39060 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
COL18A1P39060 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL18A1P39060 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL18A1P39060 DMD-211ENST00000378707 7410 ntTSL 5 BASIC4.89□□□□□ -1.63
COL18A1P39060 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.89□□□□□ -1.63
COL18A1P39060 AL512649.1-201ENST00000428997 581 ntBASIC4.89□□□□□ -1.63
COL18A1P39060 AC127537.2-201ENST00000439258 465 ntBASIC4.89□□□□□ -1.63
COL18A1P39060 EIF4A1P11-201ENST00000451239 222 ntBASIC4.89□□□□□ -1.63
COL18A1P39060 AC021146.3-201ENST00000511911 260 ntBASIC4.89□□□□□ -1.63
COL18A1P39060 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.89□□□□□ -1.63
COL18A1P39060 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.89□□□□□ -1.63
COL18A1P39060 AC090877.1-201ENST00000561418 344 ntBASIC4.89□□□□□ -1.63
COL18A1P39060 MIMT1-201ENST00000597105 1050 ntBASIC4.89□□□□□ -1.63
COL18A1P39060 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.89□□□□□ -1.63
COL18A1P39060 AL137843.1-201ENST00000605078 385 ntBASIC4.89□□□□□ -1.63
COL18A1P39060 ATE1-AS1-202ENST00000636460 506 ntBASIC4.89□□□□□ -1.63
COL18A1P39060 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC4.89□□□□□ -1.63
COL18A1P39060 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL18A1P39060 PRUNE2-208ENST00000443509 12356 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
COL18A1P39060 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL18A1P39060 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL18A1P39060 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
COL18A1P39060 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
COL18A1P39060 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
COL18A1P39060 RNA5SP50-201ENST00000363731 107 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 FAM26F-203ENST00000368606 546 ntTSL 3 BASIC4.88□□□□□ -1.63
COL18A1P39060 AC234772.1-201ENST00000377927 937 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 SNORA48.2-201ENST00000390926 124 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 SNORD17-201ENST00000390930 237 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 OR4K6P-201ENST00000416478 897 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 AC007349.1-201ENST00000419326 587 ntTSL 4 BASIC4.88□□□□□ -1.63
COL18A1P39060 AL355303.1-201ENST00000428920 680 ntTSL 3 BASIC4.88□□□□□ -1.63
COL18A1P39060 KCTD9P3-201ENST00000434597 1169 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.88□□□□□ -1.63
COL18A1P39060 AL035443.1-202ENST00000442841 586 ntTSL 2 BASIC4.88□□□□□ -1.63
COL18A1P39060 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.88□□□□□ -1.63
COL18A1P39060 RPL21P10-201ENST00000463521 490 ntBASIC4.88□□□□□ -1.63
COL18A1P39060 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.88□□□□□ -1.63
COL18A1P39060 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.88□□□□□ -1.63
COL18A1P39060 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.88□□□□□ -1.63
COL18A1P39060 AC011396.1-201ENST00000507391 312 ntTSL 3 BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms