Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 AC091516.1-201ENST00000549191 703 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 CCNG2P1-201ENST00000549521 1000 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 AC008894.1-201ENST00000587693 367 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXC9P31274 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC5.38□□□□□ -1.55
HOXC9P31274 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXC9P31274 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.38□□□□□ -1.55
HOXC9P31274 AL159169.2-201ENST00000610061 1269 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 AL356515.1-201ENST00000611081 415 ntTSL 3 BASIC5.38□□□□□ -1.55
HOXC9P31274 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC5.38□□□□□ -1.55
HOXC9P31274 AL645927.2-201ENST00000618350 349 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
HOXC9P31274 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXC9P31274 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.38□□□□□ -1.55
HOXC9P31274 MTCO1P7-201ENST00000419523 1542 ntBASIC5.38□□□□□ -1.55
HOXC9P31274 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
HOXC9P31274 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXC9P31274 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXC9P31274 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXC9P31274 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXC9P31274 PCAT14-202ENST00000627127 3935 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC5.37□□□□□ -1.55
HOXC9P31274 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXC9P31274 IL36B-201ENST00000259213 1186 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXC9P31274 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXC9P31274 PVALB-202ENST00000404171 422 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXC9P31274 RN7SKP156-201ENST00000410308 342 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXC9P31274 AL121882.1-201ENST00000422893 417 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 ZNF965P-201ENST00000432501 817 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 AC010723.1-201ENST00000435111 540 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXC9P31274 AL390879.2-204ENST00000438602 582 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXC9P31274 AL513321.1-201ENST00000441175 761 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 AC015908.1-201ENST00000478739 476 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 RN7SL323P-201ENST00000494712 295 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 AC010468.3-201ENST00000508225 458 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 ASNSP4-201ENST00000511103 447 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 AC093770.1-201ENST00000511559 571 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXC9P31274 AC027338.1-201ENST00000514840 825 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 AC093853.1-201ENST00000515689 483 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 RNA5SP179-201ENST00000517284 121 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
HOXC9P31274 AC113423.1-201ENST00000523279 289 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXC9P31274 THEM7P-202ENST00000525689 764 ntTSL 3 BASIC5.37□□□□□ -1.55
HOXC9P31274 AP002989.1-201ENST00000533459 562 ntTSL 4 BASIC5.37□□□□□ -1.55
HOXC9P31274 SULT6B1-205ENST00000535679 1027 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXC9P31274 AL160314.2-204ENST00000554730 380 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXC9P31274 RPL21P7-201ENST00000557463 483 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.37□□□□□ -1.55
HOXC9P31274 AC090312.1-201ENST00000580637 348 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXC9P31274 EIF4A2P1-201ENST00000587313 1063 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 AC015726.1-201ENST00000602353 681 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 KATNBL1P5-201ENST00000605015 517 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 AC091167.4-201ENST00000605079 184 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 AC144521.1-201ENST00000607148 956 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 AC138907.10-201ENST00000623708 983 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXC9P31274 GPBP1-205ENST00000511209 2243 ntAPPRIS ALT2 TSL 2 BASIC5.37□□□□□ -1.55
HOXC9P31274 AL592494.2-201ENST00000425455 1548 ntBASIC5.37□□□□□ -1.55
HOXC9P31274 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
HOXC9P31274 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC5.37□□□□□ -1.55
HOXC9P31274 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
HOXC9P31274 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXC9P31274 AC020633.1-201ENST00000468439 2247 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
HOXC9P31274 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXC9P31274 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
HOXC9P31274 AC067945.1-201ENST00000342609 618 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 MIR200C-201ENST00000384980 68 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 GSTA12P-201ENST00000402398 508 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 HMGB3P19-201ENST00000403971 560 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 AL359643.1-201ENST00000404109 423 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 RNU2-22P-201ENST00000411266 212 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 AC093578.1-201ENST00000415219 368 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 AC069157.1-201ENST00000421749 137 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 SKP1P3-201ENST00000429280 487 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 PRELID3BP10-201ENST00000431957 584 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 AC245517.2-201ENST00000442890 346 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 PTMAP3-201ENST00000447474 330 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 RPS20P21-201ENST00000466859 343 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC5.36□□□□□ -1.55
HOXC9P31274 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC5.36□□□□□ -1.55
HOXC9P31274 PPP1R11P1-201ENST00000486095 376 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 HMGB1P3-201ENST00000502802 616 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 AC021087.2-201ENST00000504656 1203 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 AB015752.1-201ENST00000521975 578 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXC9P31274 AP002373.1-201ENST00000544347 729 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
HOXC9P31274 NOP56P3-201ENST00000549457 385 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 LINC01584-202ENST00000563990 852 ntTSL 3 BASIC5.36□□□□□ -1.55
HOXC9P31274 AC135050.5-201ENST00000576336 543 ntTSL 4 BASIC5.36□□□□□ -1.55
HOXC9P31274 AC087499.8-201ENST00000578406 226 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC5.36□□□□□ -1.55
HOXC9P31274 SNORA51-201ENST00000606420 132 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXC9P31274 SNORD91B-202ENST00000608459 222 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 AP005264.7-201ENST00000625003 745 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 AC073869.7-201ENST00000640874 297 ntBASIC5.36□□□□□ -1.55
HOXC9P31274 KMT2E-216ENST00000622386 1588 ntTSL 5 BASIC5.36□□□□□ -1.55
HOXC9P31274 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms