Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A3P25940 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL5A3P25940 MFSD8-236ENST00000641509 4050 ntBASIC4.71□□□□□ -1.66
COL5A3P25940 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.66
COL5A3P25940 UFM1-201ENST00000239878 3138 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.7□□□□□ -1.66
COL5A3P25940 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 CBX1P3-201ENST00000413296 527 ntBASIC4.7□□□□□ -1.66
COL5A3P25940 HSFY4P-201ENST00000415994 1181 ntBASIC4.7□□□□□ -1.66
COL5A3P25940 OR51A6P-201ENST00000418680 1004 ntBASIC4.7□□□□□ -1.66
COL5A3P25940 NPM1P25-201ENST00000429734 854 ntBASIC4.7□□□□□ -1.66
COL5A3P25940 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC4.7□□□□□ -1.66
COL5A3P25940 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.7□□□□□ -1.66
COL5A3P25940 RPL21P10-201ENST00000463521 490 ntBASIC4.7□□□□□ -1.66
COL5A3P25940 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC4.7□□□□□ -1.66
COL5A3P25940 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.7□□□□□ -1.66
COL5A3P25940 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.7□□□□□ -1.66
COL5A3P25940 AC026782.2-201ENST00000510845 636 ntBASIC4.7□□□□□ -1.66
COL5A3P25940 RNU6-513P-201ENST00000516104 104 ntBASIC4.7□□□□□ -1.66
COL5A3P25940 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 AC069240.1-201ENST00000548774 375 ntBASIC4.7□□□□□ -1.66
COL5A3P25940 AC090403.1-205ENST00000580883 516 ntTSL 2 BASIC4.7□□□□□ -1.66
COL5A3P25940 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.7□□□□□ -1.66
COL5A3P25940 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.7□□□□□ -1.66
COL5A3P25940 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 UBE3AP2-201ENST00000429033 2259 ntBASIC4.7□□□□□ -1.66
COL5A3P25940 OR2L3-201ENST00000359959 2792 ntAPPRIS P1 BASIC4.7□□□□□ -1.66
COL5A3P25940 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC4.7□□□□□ -1.66
COL5A3P25940 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 ZNF733P-201ENST00000331425 1506 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC4.7□□□□□ -1.66
COL5A3P25940 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
COL5A3P25940 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 ADGRG2-206ENST00000360279 4702 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL5A3P25940 AC005261.6-201ENST00000623072 1387 ntBASIC4.69□□□□□ -1.66
COL5A3P25940 MYB-213ENST00000525369 2866 ntTSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A3P25940 AC073063.1-201ENST00000434352 607 ntBASIC4.69□□□□□ -1.66
COL5A3P25940 Z75741.1-201ENST00000446793 314 ntBASIC4.69□□□□□ -1.66
COL5A3P25940 SNORD105B-201ENST00000458770 79 ntBASIC4.69□□□□□ -1.66
COL5A3P25940 AC108467.1-201ENST00000515623 672 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A3P25940 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A3P25940 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC4.69□□□□□ -1.66
COL5A3P25940 AC010928.1-202ENST00000589354 473 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A3P25940 AC021517.1-203ENST00000590257 421 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A3P25940 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC4.69□□□□□ -1.66
COL5A3P25940 AL137843.1-201ENST00000605078 385 ntBASIC4.69□□□□□ -1.66
COL5A3P25940 Xist_exon4.1-201ENST00000615964 126 ntBASIC4.69□□□□□ -1.66
COL5A3P25940 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A3P25940 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.69□□□□□ -1.66
COL5A3P25940 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC4.69□□□□□ -1.66
COL5A3P25940 RBM39-201ENST00000253363 2488 ntAPPRIS P4 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A3P25940 IGF1-202ENST00000337514 7359 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL5A3P25940 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.69□□□□□ -1.66
COL5A3P25940 MLF1-208ENST00000478894 1372 ntTSL 2 BASIC4.69□□□□□ -1.66
COL5A3P25940 AC245054.1-201ENST00000420944 258 ntBASIC4.69□□□□□ -1.66
COL5A3P25940 AL391219.1-201ENST00000422570 483 ntBASIC4.69□□□□□ -1.66
COL5A3P25940 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC4.69□□□□□ -1.66
COL5A3P25940 SNORA71B-202ENST00000439232 272 ntBASIC4.69□□□□□ -1.66
COL5A3P25940 RBMY2UP-201ENST00000453474 324 ntBASIC4.69□□□□□ -1.66
COL5A3P25940 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.69□□□□□ -1.66
COL5A3P25940 AC104619.2-201ENST00000514293 646 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A3P25940 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.69□□□□□ -1.66
COL5A3P25940 AP003733.3-201ENST00000524942 788 ntTSL 2 BASIC4.69□□□□□ -1.66
COL5A3P25940 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.69□□□□□ -1.66
COL5A3P25940 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.68□□□□□ -1.66
COL5A3P25940 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A3P25940 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC4.68□□□□□ -1.66
COL5A3P25940 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
COL5A3P25940 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A3P25940 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.68□□□□□ -1.66
COL5A3P25940 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.68□□□□□ -1.66
COL5A3P25940 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A3P25940 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A3P25940 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A3P25940 AL645931.1-201ENST00000439737 410 ntBASIC4.68□□□□□ -1.66
COL5A3P25940 AC107021.1-202ENST00000480247 555 ntTSL 5 BASIC4.68□□□□□ -1.66
COL5A3P25940 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.68□□□□□ -1.66
COL5A3P25940 TRAV15-201ENST00000556680 249 ntBASIC4.68□□□□□ -1.66
COL5A3P25940 AC068875.1-201ENST00000561054 463 ntTSL 3 BASIC4.68□□□□□ -1.66
COL5A3P25940 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC4.68□□□□□ -1.66
COL5A3P25940 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.68□□□□□ -1.66
COL5A3P25940 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC4.68□□□□□ -1.66
COL5A3P25940 AC009303.3-201ENST00000591103 736 ntBASIC4.68□□□□□ -1.66
COL5A3P25940 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC4.68□□□□□ -1.66
COL5A3P25940 AL354976.1-201ENST00000613843 387 ntBASIC4.68□□□□□ -1.66
COL5A3P25940 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC4.68□□□□□ -1.66
COL5A3P25940 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A3P25940 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A3P25940 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A3P25940 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.68□□□□□ -1.66
COL5A3P25940 LYST-201ENST00000389793 13480 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
COL5A3P25940 NCOA1-202ENST00000348332 6895 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL5A3P25940 SRSF11-202ENST00000370950 3784 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL5A3P25940 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL5A3P25940 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
COL5A3P25940 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.67□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms