Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 GTF2IP8-201ENST00000560687 584 ntBASIC6.57□□□□□ -1.36
LIG1P18858 UBE2FP2-201ENST00000566646 462 ntBASIC6.57□□□□□ -1.36
LIG1P18858 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG1P18858 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.57□□□□□ -1.36
LIG1P18858 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG1P18858 AC007953.2-201ENST00000603299 193 ntTSL 5 BASIC6.57□□□□□ -1.36
LIG1P18858 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC6.57□□□□□ -1.36
LIG1P18858 AC018816.2-201ENST00000621460 353 ntBASIC6.57□□□□□ -1.36
LIG1P18858 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC6.57□□□□□ -1.36
LIG1P18858 LINC01090-203ENST00000632331 466 ntTSL 5 BASIC6.57□□□□□ -1.36
LIG1P18858 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
LIG1P18858 AC006206.1-201ENST00000544842 3387 ntBASIC6.57□□□□□ -1.36
LIG1P18858 AP002001.2-201ENST00000529025 1469 ntBASIC6.57□□□□□ -1.36
LIG1P18858 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC6.57□□□□□ -1.36
LIG1P18858 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC6.57□□□□□ -1.36
LIG1P18858 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.57□□□□□ -1.36
LIG1P18858 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
LIG1P18858 HSPA8P14-201ENST00000552265 1805 ntBASIC6.57□□□□□ -1.36
LIG1P18858 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC6.57□□□□□ -1.36
LIG1P18858 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.57□□□□□ -1.36
LIG1P18858 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
LIG1P18858 ZNF733P-202ENST00000444809 1573 ntBASIC6.57□□□□□ -1.36
LIG1P18858 MTND4P12-201ENST00000498999 1377 ntBASIC6.57□□□□□ -1.36
LIG1P18858 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC6.56□□□□□ -1.36
LIG1P18858 GHR-210ENST00000615111 4814 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
LIG1P18858 EIF3E-201ENST00000220849 1543 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG1P18858 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
LIG1P18858 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
LIG1P18858 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
LIG1P18858 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG1P18858 OR5T2-201ENST00000313264 1248 ntAPPRIS P2 BASIC6.56□□□□□ -1.36
LIG1P18858 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG1P18858 RPL21P132-201ENST00000331267 462 ntBASIC6.56□□□□□ -1.36
LIG1P18858 RNA5SP326-201ENST00000363209 110 ntBASIC6.56□□□□□ -1.36
LIG1P18858 MT-TP-201ENST00000387461 68 ntBASIC6.56□□□□□ -1.36
LIG1P18858 AL136131.1-201ENST00000406079 803 ntBASIC6.56□□□□□ -1.36
LIG1P18858 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG1P18858 AC087857.1-201ENST00000425894 467 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG1P18858 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC6.56□□□□□ -1.36
LIG1P18858 NPM1P18-201ENST00000434232 732 ntBASIC6.56□□□□□ -1.36
LIG1P18858 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG1P18858 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG1P18858 AL078581.2-201ENST00000446392 378 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG1P18858 AL118496.2-201ENST00000448300 230 ntBASIC6.56□□□□□ -1.36
LIG1P18858 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG1P18858 PSPHP1-201ENST00000450062 261 ntBASIC6.56□□□□□ -1.36
LIG1P18858 AC144530.1-201ENST00000452862 555 ntBASIC6.56□□□□□ -1.36
LIG1P18858 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG1P18858 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG1P18858 AC079382.1-201ENST00000493346 557 ntBASIC6.56□□□□□ -1.36
LIG1P18858 AC138866.2-201ENST00000508650 584 ntBASIC6.56□□□□□ -1.36
LIG1P18858 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG1P18858 PTH-202ENST00000529816 799 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
LIG1P18858 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG1P18858 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC6.56□□□□□ -1.36
LIG1P18858 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG1P18858 CFL2-206ENST00000556161 546 ntTSL 4 BASIC6.56□□□□□ -1.36
LIG1P18858 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC6.56□□□□□ -1.36
LIG1P18858 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG1P18858 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.56□□□□□ -1.36
LIG1P18858 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG1P18858 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC6.56□□□□□ -1.36
LIG1P18858 FAM27E4-201ENST00000605259 342 ntBASIC6.56□□□□□ -1.36
LIG1P18858 AC087045.1-201ENST00000605856 382 ntBASIC6.56□□□□□ -1.36
LIG1P18858 MIR6793-201ENST00000612376 63 ntBASIC6.56□□□□□ -1.36
LIG1P18858 AC002553.4-201ENST00000616896 331 ntBASIC6.56□□□□□ -1.36
LIG1P18858 MIR6133-201ENST00000617057 108 ntBASIC6.56□□□□□ -1.36
LIG1P18858 AC012409.2-201ENST00000619812 751 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG1P18858 AC129915.3-201ENST00000634128 948 ntBASIC6.56□□□□□ -1.36
LIG1P18858 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG1P18858 RMST-209ENST00000639542 3269 ntTSL 5 BASIC6.56□□□□□ -1.36
LIG1P18858 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG1P18858 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
LIG1P18858 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC6.56□□□□□ -1.36
LIG1P18858 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
LIG1P18858 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC6.56□□□□□ -1.36
LIG1P18858 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG1P18858 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
LIG1P18858 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
LIG1P18858 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC6.55□□□□□ -1.36
LIG1P18858 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
LIG1P18858 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC6.55□□□□□ -1.36
LIG1P18858 AC100871.1-201ENST00000507871 1456 ntBASIC6.55□□□□□ -1.36
LIG1P18858 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
LIG1P18858 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
LIG1P18858 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
LIG1P18858 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.55□□□□□ -1.36
LIG1P18858 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC6.55□□□□□ -1.36
LIG1P18858 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
LIG1P18858 OR5K4-201ENST00000354924 966 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
LIG1P18858 RNA5SP88-201ENST00000365560 109 ntBASIC6.55□□□□□ -1.36
LIG1P18858 ADIG-201ENST00000373348 430 ntTSL 2 BASIC6.55□□□□□ -1.36
LIG1P18858 MIR16-1-201ENST00000385271 89 ntBASIC6.55□□□□□ -1.36
LIG1P18858 RNU6-244P-201ENST00000391028 104 ntBASIC6.55□□□□□ -1.36
LIG1P18858 RN7SKP285-201ENST00000410137 318 ntBASIC6.55□□□□□ -1.36
LIG1P18858 AL354766.2-201ENST00000414085 423 ntTSL 2 BASIC6.55□□□□□ -1.36
LIG1P18858 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC6.55□□□□□ -1.36
LIG1P18858 GAPDHP49-201ENST00000421421 961 ntBASIC6.55□□□□□ -1.36
LIG1P18858 AC126120.1-201ENST00000431082 470 ntBASIC6.55□□□□□ -1.36
LIG1P18858 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC6.55□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 145.6 ms