Protein–RNA interactions for Protein: Q9Y5X1

SNX9, Sorting nexin-9, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNX9Q9Y5X1 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.88□□□□□ -1.63
SNX9Q9Y5X1 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 DPP10-204ENST00000409163 3883 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 RNU1-94P-201ENST00000362627 173 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 RNU5B-4P-201ENST00000363508 111 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 KLRC2-201ENST00000381901 1211 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 KLRC2-202ENST00000381902 1221 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC087276.2-201ENST00000394183 183 ntTSL 5 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 SDHCP2-201ENST00000398565 501 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 RNU2-17P-201ENST00000410290 190 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 RNU4-74P-201ENST00000411280 161 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 EIF4A1P3-201ENST00000411521 244 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 UBE2V1P9-201ENST00000414760 368 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC092447.3-201ENST00000426027 686 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 NDUFA5P10-201ENST00000432147 357 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 ELOCP10-201ENST00000440624 327 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC115989.1-202ENST00000452153 1150 ntTSL 2 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 LINC01921-201ENST00000456163 393 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 RPL7AP28-201ENST00000464513 571 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC139491.3-201ENST00000509643 684 ntTSL 3 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 RN7SKP46-201ENST00000515942 234 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 SNORA19.3-201ENST00000516165 130 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC073864.1-201ENST00000540161 562 ntTSL 4 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC068714.1-201ENST00000559623 800 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC009712.1-201ENST00000564938 316 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 MIR4509-3-201ENST00000578671 94 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 MIR4509-2-201ENST00000583920 94 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC068020.1-201ENST00000594215 661 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AL445435.1-201ENST00000604232 665 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC133552.5-201ENST00000604266 540 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 ELOCP34-201ENST00000604436 327 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 RNU6-1192P-201ENST00000612197 107 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC140725.3-201ENST00000616193 880 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 MIR4509-1-201ENST00000618224 94 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 RNU6-489P-201ENST00000618289 107 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 THRA1/BTR-204ENST00000621191 513 ntTSL 5 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AL356863.1-201ENST00000623378 1080 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC068787.1-201ENST00000623908 691 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 LINC01808-202ENST00000641680 1116 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 DLD-204ENST00000437604 1859 ntTSL 2 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AL672167.1-203ENST00000641299 2975 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 AC009229.4-201ENST00000623854 1947 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 OR56B2P-202ENST00000641377 2453 ntBASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SNX9Q9Y5X1 PTPN13-202ENST00000411767 8119 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 ASNSP1-201ENST00000518311 1939 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 DDX18P4-201ENST00000511690 1966 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 SNORD56.4-201ENST00000363883 71 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AC234772.1-201ENST00000377927 937 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 CLEC7A-206ENST00000396484 1000 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AL121834.1-202ENST00000404494 277 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 RPS27AP7-201ENST00000422792 455 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AC115285.1-201ENST00000424879 736 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AP001324.1-201ENST00000428553 399 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 RPL12P28-201ENST00000430852 489 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AC092013.1-201ENST00000438795 332 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 ARF4P4-201ENST00000439608 520 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 MED6P1-201ENST00000439659 713 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 CYCSP42-201ENST00000450823 238 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 RPL7AP52-201ENST00000458096 790 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AL139824.2-201ENST00000458731 1095 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 RPL21P126-201ENST00000470049 478 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 HPRT1P1-201ENST00000509498 657 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AC008728.1-201ENST00000512730 691 ntTSL 2 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 MAL2-205ENST00000521048 575 ntTSL 4 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 IGHVIII-38-1-201ENST00000521454 282 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AC009563.1-202ENST00000523365 643 ntTSL 3 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 OR8G5-201ENST00000524943 1041 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 HIGD1AP5-201ENST00000529959 259 ntBASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 FAM222A-AS1-202ENST00000541460 751 ntTSL 4 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.86□□□□□ -1.63
SNX9Q9Y5X1 AP000919.1-202ENST00000581139 1264 ntBASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 120 ms