Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 C9orf72-203ENST00000380003 3200 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 FAM81B-201ENST00000283357 1560 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 RIMS1-212ENST00000517827 3065 ntTSL 2 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 GABRA2-202ENST00000381620 2525 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 IL21-201ENST00000264497 629 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 RNA5SP28-201ENST00000363841 119 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 RNU6-353P-201ENST00000364266 108 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 MTCO1P56-201ENST00000401674 224 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 EIF4EBP2P3-201ENST00000403144 334 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AL445189.1-201ENST00000405722 338 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 MIR1303-201ENST00000408625 86 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC002524.1-201ENST00000411687 547 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 MTATP6P20-201ENST00000414147 562 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 RPL36AP36-201ENST00000418616 301 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC073069.1-201ENST00000428657 441 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 EEF1A1P1-201ENST00000447052 739 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 CEACAMP6-201ENST00000452007 574 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC244505.3-201ENST00000454598 187 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 RNU7-140P-201ENST00000459546 60 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC093752.1-206ENST00000511823 336 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC092440.1-201ENST00000512563 571 ntTSL 4 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC010306.1-201ENST00000523223 1117 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 LRRC6P1-201ENST00000532188 885 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 MTND1P24-201ENST00000552175 861 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 NMNAT1P1-201ENST00000554095 876 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC027455.1-201ENST00000574104 594 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC053481.3-201ENST00000577881 843 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC069366.1-201ENST00000583159 838 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AC006116.5-201ENST00000591936 559 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AL353811.1-201ENST00000602851 736 ntTSL 5 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AL160237.3-201ENST00000604114 1013 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 BNIP3P4-201ENST00000604946 565 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 IL21-202ENST00000611104 707 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AL121890.2-201ENST00000617644 465 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 BX649567.1-201ENST00000642071 1134 ntBASIC4.75□□□□□ -1.65
COL28A1Q2UY09 CNTRL-205ENST00000373850 5824 ntTSL 2 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 ADGRL2-204ENST00000370715 5585 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
COL28A1Q2UY09 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC022031.1-201ENST00000585985 2593 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 NRK-204ENST00000540278 1687 ntTSL 2 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC006210.2-201ENST00000367074 1545 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 RNU6-525P-201ENST00000363685 104 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 ANAPC10P1-201ENST00000395991 556 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AL021331.1-201ENST00000402817 582 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 GSTM3P2-201ENST00000412746 530 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC007738.1-201ENST00000413892 348 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 TRIM60P5Y-201ENST00000413946 574 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 MTND4P3-201ENST00000417829 541 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 ITCH-IT1-201ENST00000418598 208 ntTSL 3 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AL451070.1-201ENST00000430143 439 ntTSL 5 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AL023693.1-201ENST00000434255 216 ntTSL 5 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AL929288.2-201ENST00000446368 407 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 MTND2P8-201ENST00000450555 1025 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 TPMTP4-201ENST00000450749 678 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 RPL21P131-201ENST00000497298 483 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC097535.1-201ENST00000515263 332 ntTSL 3 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 RNU6-347P-201ENST00000516658 105 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 SCARNA13-201ENST00000516672 275 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 IGKV3OR22-2-201ENST00000517943 313 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 IGKV2-36-201ENST00000519999 223 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC027369.5-201ENST00000533838 755 ntBASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AP000462.1-201ENST00000535704 818 ntTSL 3 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.74□□□□□ -1.65
COL28A1Q2UY09 AC090312.2-201ENST00000582687 378 ntBASIC4.74□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms