Protein–RNA interactions for Protein: Q15651

HMGN3, High mobility group nucleosome-binding domain-containing protein 3, humanhuman

Predictions only

Length 99 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3Q15651 AC124312.6-202ENST00000623624 418 ntBASIC3.34□□□□□ -1.87
HMGN3Q15651 AP000843.1-201ENST00000624880 701 ntBASIC3.34□□□□□ -1.87
HMGN3Q15651 MIR3653-201ENST00000625572 110 ntBASIC3.34□□□□□ -1.87
HMGN3Q15651 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC3.34□□□□□ -1.87
HMGN3Q15651 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC3.34□□□□□ -1.87
HMGN3Q15651 OR5AC4P-202ENST00000642086 985 ntBASIC3.34□□□□□ -1.87
HMGN3Q15651 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
HMGN3Q15651 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.34□□□□□ -1.87
HMGN3Q15651 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC3.34□□□□□ -1.88
HMGN3Q15651 HGF-202ENST00000354224 1425 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
HMGN3Q15651 SPATA2P1-201ENST00000431223 2055 ntBASIC3.34□□□□□ -1.88
HMGN3Q15651 RIOK3P1-201ENST00000418778 1528 ntBASIC3.34□□□□□ -1.88
HMGN3Q15651 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.33□□□□□ -1.88
HMGN3Q15651 UBE3AP2-201ENST00000429033 2259 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 RAD17-202ENST00000305138 3164 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HMGN3Q15651 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC3.33□□□□□ -1.88
HMGN3Q15651 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HMGN3Q15651 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HMGN3Q15651 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.33□□□□□ -1.88
HMGN3Q15651 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC3.33□□□□□ -1.88
HMGN3Q15651 LRRTM4-201ENST00000409088 3616 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HMGN3Q15651 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
HMGN3Q15651 WFDC6-202ENST00000372670 620 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HMGN3Q15651 RNU6-178P-201ENST00000384631 104 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 U3.22-201ENST00000391120 215 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 ATP5F1P4-201ENST00000397288 746 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 HMGB3P19-201ENST00000403971 560 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 MTCO3P31-201ENST00000405526 789 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC3.33□□□□□ -1.88
HMGN3Q15651 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.33□□□□□ -1.88
HMGN3Q15651 AC245028.1-201ENST00000423259 256 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC3.33□□□□□ -1.88
HMGN3Q15651 GPC6-AS1-201ENST00000436329 698 ntTSL 5 BASIC3.33□□□□□ -1.88
HMGN3Q15651 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC3.33□□□□□ -1.88
HMGN3Q15651 CYCSP42-201ENST00000450823 238 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 RPS29P33-201ENST00000456717 146 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 RNU7-170P-201ENST00000459303 61 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 UQCRHP4-201ENST00000471686 272 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 AC091167.1-201ENST00000492017 396 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 AC093840.1-201ENST00000511599 336 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 EGFLAM-AS2-201ENST00000512603 466 ntTSL 5 BASIC3.33□□□□□ -1.88
HMGN3Q15651 EGFLAM-AS2-202ENST00000514377 539 ntTSL 3 BASIC3.33□□□□□ -1.88
HMGN3Q15651 RNU6-1334P-201ENST00000516032 105 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 FBXO3-AS1-202ENST00000533046 386 ntTSL 3 BASIC3.33□□□□□ -1.88
HMGN3Q15651 PDCL2P2-201ENST00000533651 189 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 AC073655.2-202ENST00000547927 401 ntTSL 3 BASIC3.33□□□□□ -1.88
HMGN3Q15651 AL389895.1-201ENST00000554127 252 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 MIR4675-201ENST00000577898 77 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC3.33□□□□□ -1.88
HMGN3Q15651 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC3.33□□□□□ -1.88
HMGN3Q15651 OR6R2P-201ENST00000609216 300 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 AC116651.1-201ENST00000609724 556 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 AC114781.5-201ENST00000615297 108 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 AL591424.2-201ENST00000617023 128 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 MIR8059-201ENST00000620427 81 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 AC073342.3-201ENST00000624211 193 ntBASIC3.33□□□□□ -1.88
HMGN3Q15651 SLC6A15-203ENST00000450363 4229 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HMGN3Q15651 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
HMGN3Q15651 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HMGN3Q15651 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC3.32□□□□□ -1.88
HMGN3Q15651 RNU11-4P-201ENST00000391149 133 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 HSPE1P12-201ENST00000412576 301 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 OR51A6P-201ENST00000418680 1004 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 AL592293.2-201ENST00000422292 996 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 AC068287.1-201ENST00000430283 295 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC3.32□□□□□ -1.88
HMGN3Q15651 SKP1P1-201ENST00000438081 489 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 EIF2S2P2-201ENST00000447161 982 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC3.32□□□□□ -1.88
HMGN3Q15651 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC3.32□□□□□ -1.88
HMGN3Q15651 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC3.32□□□□□ -1.88
HMGN3Q15651 AP000926.1-201ENST00000479573 241 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 RPL7P24-201ENST00000493052 752 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC3.32□□□□□ -1.88
HMGN3Q15651 AC026726.1-201ENST00000512859 601 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HMGN3Q15651 RN7SKP60-201ENST00000516985 239 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC3.32□□□□□ -1.88
HMGN3Q15651 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HMGN3Q15651 AC021739.4-201ENST00000561417 569 ntTSL 4 BASIC3.32□□□□□ -1.88
HMGN3Q15651 AC138305.2-201ENST00000561595 556 ntTSL 4 BASIC3.32□□□□□ -1.88
HMGN3Q15651 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC3.32□□□□□ -1.88
HMGN3Q15651 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.32□□□□□ -1.88
HMGN3Q15651 AC068790.4-201ENST00000602474 263 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.32□□□□□ -1.88
HMGN3Q15651 AL034374.2-201ENST00000605281 548 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 UBE2NL-201ENST00000618570 1185 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
HMGN3Q15651 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HMGN3Q15651 AC011944.2-201ENST00000624440 683 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 FTO-203ENST00000460382 1517 ntTSL 5 BASIC3.32□□□□□ -1.88
HMGN3Q15651 ASNSP1-204ENST00000641977 1664 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
HMGN3Q15651 SULT1E1-201ENST00000226444 1780 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HMGN3Q15651 AC015813.6-201ENST00000624409 5808 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 AC106871.1-201ENST00000568324 3102 ntBASIC3.32□□□□□ -1.88
HMGN3Q15651 ZMYND11-209ENST00000402736 3950 ntTSL 5 BASIC3.32□□□□□ -1.88
HMGN3Q15651 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.32□□□□□ -1.88
HMGN3Q15651 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HMGN3Q15651 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
HMGN3Q15651 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.31□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms