Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA3P55318 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC2.99□□□□□ -1.93
FOXA3P55318 DTHD1-202ENST00000456874 3365 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC2.98□□□□□ -1.93
FOXA3P55318 FIGNL1-201ENST00000356889 3471 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 PRO1804-201ENST00000623780 2050 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 RNA5SP507-201ENST00000363603 121 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 RNU6-1331P-201ENST00000363658 106 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 RNU6-304P-201ENST00000364855 107 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 HSPE1P8-201ENST00000406997 288 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 SNORA11.5-201ENST00000408163 128 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AL133343.3-201ENST00000413983 469 ntTSL 2 BASIC2.98□□□□□ -1.93
FOXA3P55318 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC2.98□□□□□ -1.93
FOXA3P55318 AL158834.2-201ENST00000415731 696 ntTSL 2 BASIC2.98□□□□□ -1.93
FOXA3P55318 P2RY10P2-201ENST00000416730 913 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 UQCRBP1-201ENST00000421129 336 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AC092832.1-201ENST00000422934 400 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AL732292.1-201ENST00000426692 226 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 DIAPH3-AS2-201ENST00000428656 367 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXA3P55318 AL358472.1-201ENST00000431295 329 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 CXorf51B-201ENST00000438525 436 ntAPPRIS P1 TSL 2 BASIC2.98□□□□□ -1.93
FOXA3P55318 AC005871.1-201ENST00000450247 475 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXA3P55318 AC098824.1-201ENST00000453565 980 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 HNRNPDLP3-201ENST00000456745 380 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AL136097.1-201ENST00000456945 913 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 RNA5SP246-201ENST00000458909 119 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 RPS20P4-201ENST00000461659 355 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 RPL9P32-201ENST00000464118 620 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AF213884.1-201ENST00000488102 463 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC2.98□□□□□ -1.93
FOXA3P55318 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 AC093763.2-201ENST00000505334 1223 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AC027613.1-201ENST00000508414 457 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXA3P55318 IGLV2-28-201ENST00000520681 304 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 LONRF1-203ENST00000525024 841 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXA3P55318 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXA3P55318 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC2.98□□□□□ -1.93
FOXA3P55318 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 AC084783.1-201ENST00000565846 910 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AC069366.1-201ENST00000583159 838 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AC018761.4-201ENST00000585742 272 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXA3P55318 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC2.98□□□□□ -1.93
FOXA3P55318 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC2.98□□□□□ -1.93
FOXA3P55318 AC008782.1-201ENST00000603386 430 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AC007423.1-201ENST00000605009 627 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AC005084.1-201ENST00000605160 304 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AC123768.3-201ENST00000613733 523 ntTSL 3 BASIC2.98□□□□□ -1.93
FOXA3P55318 AL391261.4-201ENST00000616012 481 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 MIR6826-201ENST00000617808 98 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 AC124312.6-202ENST00000623624 418 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 CGA-206ENST00000630630 832 ntTSL 2 BASIC2.98□□□□□ -1.93
FOXA3P55318 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC2.98□□□□□ -1.93
FOXA3P55318 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 CEP170P1-201ENST00000502249 4587 ntBASIC2.98□□□□□ -1.93
FOXA3P55318 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 FOXP2-224ENST00000635534 4290 ntTSL 5 BASIC2.98□□□□□ -1.93
FOXA3P55318 FNBP1L-206ENST00000604705 1830 ntAPPRIS ALT1 TSL 5 BASIC2.98□□□□□ -1.93
FOXA3P55318 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
FOXA3P55318 AC004160.1-212ENST00000421121 2078 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA3P55318 SLC16A10-201ENST00000368850 10051 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA3P55318 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
FOXA3P55318 RAD17P1-201ENST00000418130 2042 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 CASC19-284ENST00000642142 1868 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 SNORD35B-201ENST00000363660 87 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA3P55318 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA3P55318 AC092155.1-202ENST00000416111 932 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
FOXA3P55318 AC119751.6-201ENST00000416712 186 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 HMGB1P37-201ENST00000439613 609 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA3P55318 AC079354.3-201ENST00000447111 311 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXA3P55318 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA3P55318 AL162151.2-201ENST00000448875 158 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 EIF4A2P4-201ENST00000458691 1196 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 AC010326.1-201ENST00000462726 602 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 RPL7P1-201ENST00000468161 747 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 RPL7P9-201ENST00000468715 747 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC2.97□□□□□ -1.93
FOXA3P55318 RN7SL481P-201ENST00000477764 299 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 RPL29P14-201ENST00000495837 428 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA3P55318 IGBP1P5-201ENST00000507524 1000 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 OR52Z1-201ENST00000510471 897 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
FOXA3P55318 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA3P55318 AC010451.3-201ENST00000511721 444 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA3P55318 IGKV2-23-201ENST00000518729 323 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA3P55318 AC099520.2-201ENST00000523745 567 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA3P55318 OR5D15P-201ENST00000531671 942 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 NPM1P35-201ENST00000533043 868 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 AC007298.1-201ENST00000547346 656 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA3P55318 HMGN2P6-201ENST00000551091 273 ntBASIC2.97□□□□□ -1.93
FOXA3P55318 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC2.97□□□□□ -1.93
FOXA3P55318 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC2.97□□□□□ -1.93
FOXA3P55318 C1QBP-206ENST00000574444 901 ntTSL 3 BASIC2.97□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 161.1 ms