Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC4.2□□□□□ -1.74
COL4A4P53420 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.2□□□□□ -1.74
COL4A4P53420 DTNA-208ENST00000554864 1680 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A4P53420 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.2□□□□□ -1.74
COL4A4P53420 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A4P53420 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A4P53420 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.2□□□□□ -1.74
COL4A4P53420 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A4P53420 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
COL4A4P53420 CDC42BPA-201ENST00000334218 10134 ntTSL 5 BASIC4.2□□□□□ -1.74
COL4A4P53420 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC4.2□□□□□ -1.74
COL4A4P53420 MAPK10-320ENST00000641462 6696 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 RHOT1P2-201ENST00000366423 333 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 RPS7P15-201ENST00000415804 584 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 TCEA1P2-201ENST00000420496 906 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 ELOCP8-201ENST00000439309 332 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 ELOCP15-201ENST00000442090 332 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC4.19□□□□□ -1.74
COL4A4P53420 LINC02161-201ENST00000503691 420 ntTSL 3 BASIC4.19□□□□□ -1.74
COL4A4P53420 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC4.19□□□□□ -1.74
COL4A4P53420 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC4.19□□□□□ -1.74
COL4A4P53420 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC4.19□□□□□ -1.74
COL4A4P53420 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.19□□□□□ -1.74
COL4A4P53420 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A4P53420 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
COL4A4P53420 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.19□□□□□ -1.74
COL4A4P53420 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.19□□□□□ -1.74
COL4A4P53420 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A4P53420 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC4.19□□□□□ -1.74
COL4A4P53420 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
COL4A4P53420 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.19□□□□□ -1.74
COL4A4P53420 RNA5SP267-201ENST00000364893 126 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC4.19□□□□□ -1.74
COL4A4P53420 AC093581.1-202ENST00000430890 391 ntTSL 2 BASIC4.19□□□□□ -1.74
COL4A4P53420 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC4.19□□□□□ -1.74
COL4A4P53420 ST6GAL2-IT1-201ENST00000446058 388 ntTSL 2 BASIC4.19□□□□□ -1.74
COL4A4P53420 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC4.19□□□□□ -1.74
COL4A4P53420 NDUFA5P2-201ENST00000519723 344 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC4.19□□□□□ -1.74
COL4A4P53420 MIMT1-201ENST00000597105 1050 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC4.19□□□□□ -1.74
COL4A4P53420 AL451044.1-201ENST00000604867 238 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 AL136370.1-201ENST00000608166 691 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 AL157762.1-201ENST00000619612 415 ntBASIC4.19□□□□□ -1.74
COL4A4P53420 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
COL4A4P53420 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL4A4P53420 ZMYND11-217ENST00000627286 3914 ntTSL 5 BASIC4.18□□□□□ -1.74
COL4A4P53420 GRIA3-207ENST00000620443 4943 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL4A4P53420 RORB-201ENST00000376896 9551 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL4A4P53420 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL4A4P53420 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
COL4A4P53420 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
COL4A4P53420 CYP3A7-CYP3A51P-201ENST00000611620 1608 ntTSL 5 BASIC4.18□□□□□ -1.74
COL4A4P53420 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
COL4A4P53420 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL4A4P53420 TRPM3-206ENST00000377097 554 ntTSL 2 BASIC4.18□□□□□ -1.74
COL4A4P53420 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC4.18□□□□□ -1.74
COL4A4P53420 AC236972.1-201ENST00000433225 199 ntBASIC4.18□□□□□ -1.74
COL4A4P53420 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.18□□□□□ -1.74
COL4A4P53420 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC4.18□□□□□ -1.74
COL4A4P53420 RN7SL585P-201ENST00000470538 280 ntBASIC4.18□□□□□ -1.74
COL4A4P53420 RN7SL601P-201ENST00000471221 293 ntBASIC4.18□□□□□ -1.74
COL4A4P53420 ADGRL3-AS1-204ENST00000509461 481 ntTSL 5 BASIC4.18□□□□□ -1.74
COL4A4P53420 AC007458.1-201ENST00000542812 373 ntBASIC4.18□□□□□ -1.74
COL4A4P53420 SNX6P1-201ENST00000601728 1224 ntBASIC4.18□□□□□ -1.74
COL4A4P53420 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL4A4P53420 AC005972.3-201ENST00000606304 481 ntBASIC4.18□□□□□ -1.74
COL4A4P53420 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL4A4P53420 AC083899.2-201ENST00000423285 1376 ntBASIC4.18□□□□□ -1.74
COL4A4P53420 GPR171-201ENST00000309180 1786 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL4A4P53420 PRRC1-202ENST00000442138 5504 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
COL4A4P53420 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
COL4A4P53420 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
COL4A4P53420 DAZ4-206ENST00000449750 3271 ntTSL 5 BASIC4.18□□□□□ -1.74
COL4A4P53420 AC068254.2-201ENST00000623938 3577 ntBASIC4.17□□□□□ -1.74
COL4A4P53420 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.17□□□□□ -1.74
COL4A4P53420 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL4A4P53420 ARL4A-204ENST00000396664 1144 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL4A4P53420 MTND2P15-201ENST00000418575 892 ntBASIC4.17□□□□□ -1.74
COL4A4P53420 SEC63P1-201ENST00000425785 1258 ntBASIC4.17□□□□□ -1.74
COL4A4P53420 LINC00972-202ENST00000438065 788 ntTSL 3 BASIC4.17□□□□□ -1.74
COL4A4P53420 PLCE1-AS2-205ENST00000453183 427 ntTSL 5 BASIC4.17□□□□□ -1.74
COL4A4P53420 DCLRE1CP1-201ENST00000454630 470 ntBASIC4.17□□□□□ -1.74
COL4A4P53420 AL049873.1-201ENST00000480540 376 ntBASIC4.17□□□□□ -1.74
COL4A4P53420 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC4.17□□□□□ -1.74
COL4A4P53420 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC4.17□□□□□ -1.74
COL4A4P53420 AC008638.3-201ENST00000603341 463 ntBASIC4.17□□□□□ -1.74
COL4A4P53420 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.17□□□□□ -1.74
COL4A4P53420 AL669942.2-201ENST00000620352 697 ntBASIC4.17□□□□□ -1.74
COL4A4P53420 AC243312.2-201ENST00000623340 601 ntBASIC4.17□□□□□ -1.74
COL4A4P53420 AL773545.4-201ENST00000637262 310 ntBASIC4.17□□□□□ -1.74
COL4A4P53420 AL513478.4-201ENST00000641636 310 ntBASIC4.17□□□□□ -1.74
COL4A4P53420 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL4A4P53420 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL4A4P53420 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL4A4P53420 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
COL4A4P53420 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
COL4A4P53420 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
COL4A4P53420 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.16□□□□□ -1.74
COL4A4P53420 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.16□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 111.1 ms