Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AL590139.1-201ENST00000416267 400 ntBASIC5.08□□□□□ -1.6
BDNFP23560 BX510359.2-201ENST00000417920 305 ntBASIC5.08□□□□□ -1.6
BDNFP23560 LINC00993-201ENST00000420453 540 ntBASIC5.08□□□□□ -1.6
BDNFP23560 AL645608.4-201ENST00000423619 154 ntBASIC5.08□□□□□ -1.6
BDNFP23560 LINC01473-202ENST00000427108 695 ntTSL 5 BASIC5.08□□□□□ -1.6
BDNFP23560 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 AP000695.2-201ENST00000428667 715 ntTSL 5 BASIC5.08□□□□□ -1.6
BDNFP23560 CKS1BP5-201ENST00000434172 273 ntBASIC5.08□□□□□ -1.6
BDNFP23560 RPL35AP21-201ENST00000437667 333 ntBASIC5.08□□□□□ -1.6
BDNFP23560 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 AC068492.1-201ENST00000448672 469 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 AL592161.1-201ENST00000456389 861 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 RPS29P33-201ENST00000456717 146 ntBASIC5.08□□□□□ -1.6
BDNFP23560 RNF138P1-201ENST00000502765 546 ntBASIC5.08□□□□□ -1.6
BDNFP23560 SCARNA22-201ENST00000503991 125 ntBASIC5.08□□□□□ -1.6
BDNFP23560 AC073358.1-201ENST00000505671 684 ntBASIC5.08□□□□□ -1.6
BDNFP23560 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 AC091868.1-201ENST00000508746 304 ntBASIC5.08□□□□□ -1.6
BDNFP23560 TCP11X3P-202ENST00000514289 1254 ntBASIC5.08□□□□□ -1.6
BDNFP23560 RNU6-467P-201ENST00000517027 110 ntBASIC5.08□□□□□ -1.6
BDNFP23560 RNU6-334P-201ENST00000517072 102 ntBASIC5.08□□□□□ -1.6
BDNFP23560 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 RPL23AP53-201ENST00000521854 457 ntBASIC5.08□□□□□ -1.6
BDNFP23560 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 OR8K4P-201ENST00000534608 872 ntBASIC5.08□□□□□ -1.6
BDNFP23560 AC005868.1-201ENST00000536421 331 ntBASIC5.08□□□□□ -1.6
BDNFP23560 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC5.08□□□□□ -1.6
BDNFP23560 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
BDNFP23560 LINC00911-201ENST00000555272 546 ntTSL 2 BASIC5.08□□□□□ -1.6
BDNFP23560 AC093249.4-201ENST00000564755 259 ntBASIC5.08□□□□□ -1.6
BDNFP23560 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC5.08□□□□□ -1.6
BDNFP23560 RN7SL802P-201ENST00000577858 299 ntBASIC5.08□□□□□ -1.6
BDNFP23560 MIR5699-201ENST00000578903 90 ntBASIC5.08□□□□□ -1.6
BDNFP23560 BPTFP1-201ENST00000579209 492 ntBASIC5.08□□□□□ -1.6
BDNFP23560 AC063944.1-210ENST00000593837 519 ntTSL 5 BASIC5.08□□□□□ -1.6
BDNFP23560 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC5.08□□□□□ -1.6
BDNFP23560 AC008687.2-201ENST00000597865 520 ntBASIC5.08□□□□□ -1.6
BDNFP23560 AC073091.2-201ENST00000603205 907 ntBASIC5.08□□□□□ -1.6
BDNFP23560 AC098935.2-201ENST00000604222 466 ntBASIC5.08□□□□□ -1.6
BDNFP23560 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC5.08□□□□□ -1.6
BDNFP23560 MIR7703-201ENST00000620784 77 ntBASIC5.08□□□□□ -1.6
BDNFP23560 LDHA-225ENST00000625635 141 ntTSL 5 BASIC5.08□□□□□ -1.6
BDNFP23560 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.08□□□□□ -1.6
BDNFP23560 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.08□□□□□ -1.6
BDNFP23560 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
BDNFP23560 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.08□□□□□ -1.6
BDNFP23560 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC5.08□□□□□ -1.6
BDNFP23560 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
BDNFP23560 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC5.07□□□□□ -1.6
BDNFP23560 ZSCAN26-204ENST00000614088 2321 ntTSL 3 BASIC5.07□□□□□ -1.6
BDNFP23560 ELL2P4-201ENST00000446870 1376 ntBASIC5.07□□□□□ -1.6
BDNFP23560 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
BDNFP23560 AL590240.1-201ENST00000334118 313 ntBASIC5.07□□□□□ -1.6
BDNFP23560 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
BDNFP23560 TUBD1-204ENST00000376094 1154 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
BDNFP23560 RNU6-444P-201ENST00000383988 108 ntBASIC5.07□□□□□ -1.6
BDNFP23560 ENSAP1-201ENST00000392855 326 ntBASIC5.07□□□□□ -1.6
BDNFP23560 RPL31P2-201ENST00000413849 377 ntBASIC5.07□□□□□ -1.6
BDNFP23560 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC5.07□□□□□ -1.6
BDNFP23560 AC008280.1-201ENST00000418851 412 ntBASIC5.07□□□□□ -1.6
BDNFP23560 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC5.07□□□□□ -1.6
BDNFP23560 RPL7P57-201ENST00000423238 740 ntBASIC5.07□□□□□ -1.6
BDNFP23560 RPL21P43-201ENST00000425440 472 ntBASIC5.07□□□□□ -1.6
BDNFP23560 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.07□□□□□ -1.6
BDNFP23560 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC5.07□□□□□ -1.6
BDNFP23560 AL591848.2-201ENST00000442712 522 ntTSL 3 BASIC5.07□□□□□ -1.6
BDNFP23560 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
BDNFP23560 RPS27AP15-201ENST00000447672 466 ntBASIC5.07□□□□□ -1.6
BDNFP23560 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
BDNFP23560 AC073264.2-201ENST00000448886 166 ntBASIC5.07□□□□□ -1.6
BDNFP23560 CCNB1IP1P3-201ENST00000454702 829 ntBASIC5.07□□□□□ -1.6
BDNFP23560 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC5.07□□□□□ -1.6
BDNFP23560 RPL21P71-201ENST00000465598 459 ntBASIC5.07□□□□□ -1.6
BDNFP23560 RPS17P11-201ENST00000474297 293 ntBASIC5.07□□□□□ -1.6
BDNFP23560 AC087879.1-201ENST00000474343 374 ntBASIC5.07□□□□□ -1.6
BDNFP23560 ALDH7A1P3-201ENST00000492517 345 ntBASIC5.07□□□□□ -1.6
BDNFP23560 CASP12-210ENST00000494737 961 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
BDNFP23560 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
BDNFP23560 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC5.07□□□□□ -1.6
BDNFP23560 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC5.07□□□□□ -1.6
BDNFP23560 AC007016.1-201ENST00000512110 244 ntBASIC5.07□□□□□ -1.6
BDNFP23560 AC023141.12-201ENST00000512399 199 ntBASIC5.07□□□□□ -1.6
BDNFP23560 AC018797.3-201ENST00000513388 1241 ntBASIC5.07□□□□□ -1.6
BDNFP23560 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC5.07□□□□□ -1.6
BDNFP23560 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC5.07□□□□□ -1.6
BDNFP23560 OR4R2P-201ENST00000530815 597 ntBASIC5.07□□□□□ -1.6
BDNFP23560 LINC01495-201ENST00000532380 421 ntTSL 2 BASIC5.07□□□□□ -1.6
BDNFP23560 AL929601.2-201ENST00000549951 381 ntTSL 4 BASIC5.07□□□□□ -1.6
BDNFP23560 CR383656.6-201ENST00000550518 394 ntBASIC5.07□□□□□ -1.6
BDNFP23560 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC5.07□□□□□ -1.6
BDNFP23560 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC5.07□□□□□ -1.6
BDNFP23560 AC015911.5-201ENST00000587076 451 ntBASIC5.07□□□□□ -1.6
BDNFP23560 AL009028.1-201ENST00000604895 802 ntBASIC5.07□□□□□ -1.6
BDNFP23560 uc_338.18-201ENST00000615451 175 ntBASIC5.07□□□□□ -1.6
BDNFP23560 LINC00923-207ENST00000619015 505 ntTSL 5 BASIC5.07□□□□□ -1.6
BDNFP23560 AC012414.7-202ENST00000622705 1090 ntBASIC5.07□□□□□ -1.6
BDNFP23560 OR5T1-201ENST00000641368 1118 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms