Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
SHOX2O60902 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC4.1□□□□□ -1.75
SHOX2O60902 AC093719.1-202ENST00000392735 373 ntBASIC4.1□□□□□ -1.75
SHOX2O60902 LINC00867-202ENST00000415417 488 ntTSL 3 BASIC4.1□□□□□ -1.75
SHOX2O60902 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SHOX2O60902 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC4.1□□□□□ -1.75
SHOX2O60902 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.1□□□□□ -1.75
SHOX2O60902 AC008072.1-201ENST00000434254 824 ntBASIC4.1□□□□□ -1.75
SHOX2O60902 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.1□□□□□ -1.75
SHOX2O60902 RPL31P44-201ENST00000447680 377 ntBASIC4.1□□□□□ -1.75
SHOX2O60902 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.1□□□□□ -1.75
SHOX2O60902 RPS23P7-201ENST00000466210 444 ntBASIC4.1□□□□□ -1.75
SHOX2O60902 RPL12P20-201ENST00000475538 479 ntBASIC4.1□□□□□ -1.75
SHOX2O60902 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.1□□□□□ -1.75
SHOX2O60902 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SHOX2O60902 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.1□□□□□ -1.75
SHOX2O60902 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
SHOX2O60902 AL133247.2-201ENST00000603236 482 ntBASIC4.1□□□□□ -1.75
SHOX2O60902 AL592295.2-201ENST00000612578 206 ntBASIC4.1□□□□□ -1.75
SHOX2O60902 AC005858.4-201ENST00000623191 700 ntBASIC4.1□□□□□ -1.75
SHOX2O60902 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.1□□□□□ -1.75
SHOX2O60902 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.1□□□□□ -1.75
SHOX2O60902 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4.1□□□□□ -1.75
SHOX2O60902 MAPK10-373ENST00000641983 6772 ntBASIC4.1□□□□□ -1.75
SHOX2O60902 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.1□□□□□ -1.75
SHOX2O60902 GABPB1-204ENST00000396464 1401 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
SHOX2O60902 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC4.1□□□□□ -1.75
SHOX2O60902 ZNF442-205ENST00000545749 1884 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
SHOX2O60902 AC027290.2-201ENST00000623210 18662 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC4.09□□□□□ -1.75
SHOX2O60902 Y_RNA.62-201ENST00000362840 99 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 AL583835.1-201ENST00000399570 407 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 RNU2-50P-201ENST00000410494 143 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 RN7SKP106-201ENST00000410832 272 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 AL590139.1-201ENST00000416267 400 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.09□□□□□ -1.75
SHOX2O60902 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.09□□□□□ -1.75
SHOX2O60902 USP9YP9-201ENST00000429406 715 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC4.09□□□□□ -1.75
SHOX2O60902 FHP1-201ENST00000442741 703 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 RPL7L1P8-201ENST00000469911 741 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.09□□□□□ -1.75
SHOX2O60902 AC037198.2-201ENST00000478845 733 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 RN7SL271P-201ENST00000487601 295 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC4.09□□□□□ -1.75
SHOX2O60902 RNU7-143P-201ENST00000516781 65 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC4.09□□□□□ -1.75
SHOX2O60902 IGLVVI-25-1-201ENST00000521893 249 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 AC107373.1-201ENST00000522570 603 ntTSL 3 BASIC4.09□□□□□ -1.75
SHOX2O60902 BRD9P1-201ENST00000529855 560 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC4.09□□□□□ -1.75
SHOX2O60902 CBX3P5-201ENST00000552017 521 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 EDDM3DP-201ENST00000554692 434 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
SHOX2O60902 AP001160.4-201ENST00000596971 382 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 BMS1P7-201ENST00000602440 1052 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 AL365503.1-201ENST00000605247 905 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 AC010329.2-201ENST00000595195 2737 ntBASIC4.09□□□□□ -1.75
SHOX2O60902 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.09□□□□□ -1.75
SHOX2O60902 CFTR-201ENST00000003084 6132 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
SHOX2O60902 ASNSP1-204ENST00000641977 1664 ntBASIC4.09□□□□□ -1.76
SHOX2O60902 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
SHOX2O60902 GTDC1-206ENST00000409214 2954 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHOX2O60902 AC008033.1-201ENST00000216407 1162 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHOX2O60902 OR6C74-201ENST00000343870 1105 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SHOX2O60902 DPPA3-201ENST00000345088 1079 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHOX2O60902 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHOX2O60902 RN7SKP227-201ENST00000364445 330 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SHOX2O60902 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHOX2O60902 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC4.08□□□□□ -1.76
SHOX2O60902 MIR184-201ENST00000384962 84 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 TRAJ7-201ENST00000390530 59 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
SHOX2O60902 AL590704.1-201ENST00000402856 794 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
SHOX2O60902 HSPE1P8-201ENST00000406997 288 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.08□□□□□ -1.76
SHOX2O60902 AC010740.1-201ENST00000417035 684 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC4.08□□□□□ -1.76
SHOX2O60902 AC104837.2-201ENST00000427236 424 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
SHOX2O60902 RPL36AP15-201ENST00000444514 266 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 RPS3AP53-201ENST00000454716 778 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC4.08□□□□□ -1.76
SHOX2O60902 RPL7P48-201ENST00000461513 746 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 APOOP2-201ENST00000461561 539 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 RPS3AP41-201ENST00000462701 778 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 RPS29P19-201ENST00000479709 171 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
SHOX2O60902 AP001960.1-201ENST00000506494 658 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 AC026784.1-201ENST00000507986 352 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 SCARNA13-201ENST00000516672 275 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 AC027801.4-201ENST00000518420 395 ntTSL 5 BASIC4.08□□□□□ -1.76
SHOX2O60902 OR8X1P-201ENST00000534542 869 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.08□□□□□ -1.76
SHOX2O60902 LINC00520-201ENST00000554186 831 ntTSL 5 BASIC4.08□□□□□ -1.76
SHOX2O60902 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC4.08□□□□□ -1.76
SHOX2O60902 BX005019.1-201ENST00000561881 1810 ntBASIC4.08□□□□□ -1.76
SHOX2O60902 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms