Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.77□□□□□ -1.65
SIX4Q9UIU6 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.77□□□□□ -1.65
SIX4Q9UIU6 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SIX4Q9UIU6 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.77□□□□□ -1.65
SIX4Q9UIU6 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
SIX4Q9UIU6 TAX1BP1-202ENST00000396319 2892 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 CDC14A-206ENST00000635056 2056 ntTSL 2 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 RNU4-44P-201ENST00000363050 141 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 SNORD56.4-201ENST00000363883 71 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 MIR3065-201ENST00000390137 79 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 RNA5SP105-201ENST00000391123 113 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AP002784.2-201ENST00000397300 549 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AF228730.1-201ENST00000397972 663 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 ZNF602P-201ENST00000405929 924 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 RNU4-74P-201ENST00000411280 161 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC016397.1-201ENST00000412463 242 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC062016.2-201ENST00000420950 676 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC092447.3-201ENST00000426027 686 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC007403.1-201ENST00000427579 567 ntTSL 4 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 RPEP2-201ENST00000432149 701 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AL359878.2-201ENST00000435531 407 ntTSL 3 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 ARF4P4-201ENST00000439608 520 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 MTCO1P53-201ENST00000441633 699 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 MLIP-IT1-201ENST00000441845 643 ntTSL 2 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 NDUFAF4P2-201ENST00000445374 520 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 RPL7L1P1-201ENST00000448259 785 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 MTND2P8-201ENST00000450555 1025 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 LINC01312-202ENST00000456347 813 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 TPT1P1-201ENST00000458495 518 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC011276.1-201ENST00000469688 323 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC020699.1-201ENST00000505161 445 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 MTCYBP19-201ENST00000517463 1124 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 HIGD1AP5-201ENST00000529959 259 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC009643.1-201ENST00000532030 391 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 NRG3-205ENST00000537893 1174 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC012254.4-201ENST00000588843 273 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC124856.1-201ENST00000600819 896 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 RPP40P2-201ENST00000603596 712 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC079587.1-201ENST00000603846 277 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AL160290.3-201ENST00000604869 165 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC025175.1-201ENST00000606482 759 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC093673.2-201ENST00000609674 331 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC097505.1-201ENST00000610199 565 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 MIR378J-201ENST00000611988 109 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AC009159.2-201ENST00000617603 606 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 AP1G1-207ENST00000564155 2723 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 CCT8P1-201ENST00000413611 1657 ntBASIC4.76□□□□□ -1.65
SIX4Q9UIU6 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 OTOGL-204ENST00000547103 8032 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
SIX4Q9UIU6 OSBPL9P1-201ENST00000604744 1469 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 FSBP-203ENST00000611249 2181 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
SIX4Q9UIU6 SEPT7P7-201ENST00000420492 1301 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SIX4Q9UIU6 AC126323.6-202ENST00000568092 3511 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SIX4Q9UIU6 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SIX4Q9UIU6 AC003092.2-201ENST00000411946 446 ntTSL 2 BASIC4.75□□□□□ -1.65
SIX4Q9UIU6 AC010385.1-201ENST00000412374 256 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 CHIAP3-201ENST00000423668 1133 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 AC093422.3-201ENST00000428506 305 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 AL590666.1-201ENST00000428641 433 ntTSL 2 BASIC4.75□□□□□ -1.65
SIX4Q9UIU6 PPIAP13-201ENST00000434706 478 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC4.75□□□□□ -1.65
SIX4Q9UIU6 AC114495.1-201ENST00000441274 436 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 MTND1P33-201ENST00000446251 917 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.75□□□□□ -1.65
SIX4Q9UIU6 DDX39BP2-208ENST00000453923 258 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.75□□□□□ -1.65
SIX4Q9UIU6 RN7SL98P-201ENST00000462271 300 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 GTPBP8-204ENST00000467752 686 ntTSL 5 BASIC4.75□□□□□ -1.65
SIX4Q9UIU6 RN7SL481P-201ENST00000477764 299 ntBASIC4.75□□□□□ -1.65
SIX4Q9UIU6 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC4.75□□□□□ -1.65
SIX4Q9UIU6 RNA5SP497-201ENST00000516081 97 ntBASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 137.4 ms