Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 RPL26P30-202ENST00000602923 645 ntBASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 AP002906.1-201ENST00000603405 233 ntBASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 AC013468.1-201ENST00000608680 598 ntBASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 MIR7973-1-201ENST00000614683 76 ntBASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 AC091905.4-201ENST00000623432 202 ntBASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 NUDT12-202ENST00000507423 1781 ntTSL 2 BASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 SEC63P2-201ENST00000503863 1939 ntBASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.19□□□□□ -1.74
PDLIM3Q53GG5 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 HERC4-204ENST00000395198 4445 ntAPPRIS ALT1 TSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 RNU5E-10P-201ENST00000363506 118 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 RNA5SP505-201ENST00000364748 108 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 RNU6-1279P-201ENST00000383917 103 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 RNU6-932P-201ENST00000391108 106 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AL390316.1-201ENST00000406279 553 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 U3.32-201ENST00000408116 212 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 COX6B1P1-201ENST00000415962 213 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC013429.2-201ENST00000418798 781 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 RWDD4P2-201ENST00000426392 563 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC122718.1-201ENST00000439448 744 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 TPMTP4-201ENST00000450749 678 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 FAM133DP-201ENST00000464802 691 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 RN7SL441P-201ENST00000492388 296 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC004980.4-201ENST00000513375 203 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 RN7SKP21-201ENST00000516503 220 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 DEFB109D-201ENST00000529497 240 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AP000889.1-201ENST00000530968 660 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 MIR100HG-213ENST00000531470 560 ntTSL 4 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC022929.1-201ENST00000560675 823 ntTSL 3 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC095057.3-201ENST00000567102 1157 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 MIR5096-201ENST00000583713 70 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 RN7SL435P-201ENST00000584418 282 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC007993.3-202ENST00000585329 725 ntTSL 5 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 STMN1P1-201ENST00000617809 440 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AL121890.3-201ENST00000618494 516 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC091046.2-201ENST00000620775 665 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AL078595.3-201ENST00000623815 1166 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AC068724.3-201ENST00000625906 87 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 ATE1-AS1-202ENST00000636460 506 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 AL022393.1-201ENST00000625142 1677 ntBASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 NUDCD1-202ENST00000427660 2098 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 APC-207ENST00000508376 10619 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
PDLIM3Q53GG5 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC073055.1-201ENST00000456901 1621 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 OR8B3-201ENST00000354597 942 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 MIR133B-201ENST00000362210 119 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 RN7SKP149-201ENST00000363008 344 ntBASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
PDLIM3Q53GG5 OR8B2-201ENST00000375013 942 ntAPPRIS P1 BASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms