Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 AC005699.1-205ENST00000510639 427 ntTSL 2 BASIC4.92□□□□□ -1.62
USP41Q3LFD5 AP000827.1-201ENST00000527814 258 ntBASIC4.92□□□□□ -1.62
USP41Q3LFD5 AC118942.1-201ENST00000529674 1035 ntBASIC4.92□□□□□ -1.62
USP41Q3LFD5 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.92□□□□□ -1.62
USP41Q3LFD5 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC4.92□□□□□ -1.62
USP41Q3LFD5 AC130462.1-201ENST00000548144 549 ntTSL 5 BASIC4.92□□□□□ -1.62
USP41Q3LFD5 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
USP41Q3LFD5 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC4.92□□□□□ -1.62
USP41Q3LFD5 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.92□□□□□ -1.62
USP41Q3LFD5 AC090948.1-201ENST00000607464 549 ntBASIC4.92□□□□□ -1.62
USP41Q3LFD5 AC034229.4-201ENST00000607861 441 ntBASIC4.92□□□□□ -1.62
USP41Q3LFD5 AL050303.3-201ENST00000613704 284 ntBASIC4.92□□□□□ -1.62
USP41Q3LFD5 AL121890.3-201ENST00000618494 516 ntBASIC4.92□□□□□ -1.62
USP41Q3LFD5 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC4.92□□□□□ -1.62
USP41Q3LFD5 DDX18P4-201ENST00000511690 1966 ntBASIC4.92□□□□□ -1.62
USP41Q3LFD5 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP41Q3LFD5 ARHGAP42-201ENST00000298815 4752 ntAPPRIS P1 TSL 5 BASIC4.92□□□□□ -1.62
USP41Q3LFD5 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
USP41Q3LFD5 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.92□□□□□ -1.62
USP41Q3LFD5 AL627171.1-201ENST00000618845 1308 ntBASIC4.92□□□□□ -1.62
USP41Q3LFD5 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
USP41Q3LFD5 AC106754.1-201ENST00000562632 1513 ntBASIC4.92□□□□□ -1.62
USP41Q3LFD5 ELAVL4-203ENST00000371821 3349 ntTSL 5 BASIC4.92□□□□□ -1.62
USP41Q3LFD5 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP41Q3LFD5 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.92□□□□□ -1.62
USP41Q3LFD5 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC092447.5-201ENST00000429367 2741 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
USP41Q3LFD5 CXADR-205ENST00000400169 1445 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 GTF2H2B-203ENST00000508065 1432 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
USP41Q3LFD5 DLX6-AS1-201ENST00000430027 15364 ntTSL 2 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP41Q3LFD5 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP41Q3LFD5 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 RNA5SP27-201ENST00000363839 119 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
USP41Q3LFD5 HMGB3P18-201ENST00000406327 590 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC073310.1-201ENST00000423226 1033 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC004938.1-201ENST00000438468 308 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AL606517.1-201ENST00000446914 387 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC008280.2-201ENST00000455473 307 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 NDUFAF4P3-201ENST00000456468 525 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC010618.1-201ENST00000469924 477 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 RPL21P126-201ENST00000470049 478 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC109327.1-201ENST00000471666 403 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC020890.1-201ENST00000491837 504 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC108471.1-201ENST00000513977 287 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC110760.3-202ENST00000515177 371 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC027701.1-201ENST00000520155 823 ntTSL 3 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC010376.1-201ENST00000522101 334 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC021451.1-201ENST00000523498 1129 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC025260.1-201ENST00000548858 430 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC011611.5-201ENST00000552477 578 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP41Q3LFD5 SNHG14-221ENST00000554726 1116 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
USP41Q3LFD5 LINC00644-201ENST00000555156 295 ntTSL 2 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 MIR4789-201ENST00000577469 82 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 KPNA2P3-201ENST00000584190 848 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC097717.1-211ENST00000600604 687 ntTSL 5 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 RPAP2P1-201ENST00000603626 1168 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC069431.2-201ENST00000604149 1099 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC092653.1-201ENST00000608509 531 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC097505.1-201ENST00000610199 565 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 MIR6716-201ENST00000613413 80 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC073569.3-201ENST00000619055 682 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 AC004943.1-201ENST00000620814 561 ntTSL 5 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 OR52H1-202ENST00000641796 1061 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 ACTR3BP5-201ENST00000448440 1479 ntBASIC4.91□□□□□ -1.62
USP41Q3LFD5 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
USP41Q3LFD5 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
USP41Q3LFD5 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
USP41Q3LFD5 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
USP41Q3LFD5 CUL2-209ENST00000537177 4271 ntTSL 5 BASIC4.9□□□□□ -1.62
USP41Q3LFD5 AL031119.1-201ENST00000404707 1879 ntBASIC4.9□□□□□ -1.62
USP41Q3LFD5 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
USP41Q3LFD5 TATDN1-201ENST00000276692 1018 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
USP41Q3LFD5 U6.112-201ENST00000384129 70 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 RNU6-298P-201ENST00000390888 96 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 OR6C4-201ENST00000394256 1046 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.9□□□□□ -1.63
USP41Q3LFD5 AC013404.1-201ENST00000413068 249 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 HMGB3P31-201ENST00000413333 595 ntBASIC4.9□□□□□ -1.63
USP41Q3LFD5 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
USP41Q3LFD5 RPL7P57-201ENST00000423238 740 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 162.8 ms