Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RNA5SP110-201ENST00000362638 115 ntBASIC5.74□□□□□ -1.49
RNF4P78317 RNU6-1085P-201ENST00000363576 107 ntBASIC5.74□□□□□ -1.49
RNF4P78317 SNORA43.1-201ENST00000364863 140 ntBASIC5.74□□□□□ -1.49
RNF4P78317 OR5V1-215ENST00000377154 1266 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
RNF4P78317 Y_RNA.535-201ENST00000384612 99 ntBASIC5.74□□□□□ -1.49
RNF4P78317 AMD1P2-201ENST00000412936 992 ntBASIC5.74□□□□□ -1.49
RNF4P78317 RAD23BP1-201ENST00000421404 1227 ntBASIC5.74□□□□□ -1.49
RNF4P78317 AL137071.1-201ENST00000422150 243 ntTSL 3 BASIC5.74□□□□□ -1.49
RNF4P78317 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.74□□□□□ -1.49
RNF4P78317 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC5.74□□□□□ -1.49
RNF4P78317 AC010235.1-201ENST00000450613 547 ntTSL 3 BASIC5.74□□□□□ -1.49
RNF4P78317 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC5.74□□□□□ -1.49
RNF4P78317 AL049548.1-201ENST00000458194 385 ntTSL 2 BASIC5.74□□□□□ -1.49
RNF4P78317 AC023598.1-201ENST00000472521 361 ntBASIC5.74□□□□□ -1.49
RNF4P78317 AC079382.1-201ENST00000493346 557 ntBASIC5.74□□□□□ -1.49
RNF4P78317 KLRA1P-201ENST00000503499 986 ntBASIC5.74□□□□□ -1.49
RNF4P78317 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.74□□□□□ -1.49
RNF4P78317 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC5.74□□□□□ -1.49
RNF4P78317 RN7SKP70-201ENST00000516655 271 ntBASIC5.74□□□□□ -1.49
RNF4P78317 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC5.74□□□□□ -1.49
RNF4P78317 ARL2BPP5-201ENST00000523141 481 ntBASIC5.74□□□□□ -1.49
RNF4P78317 AP000790.1-201ENST00000528891 737 ntBASIC5.74□□□□□ -1.49
RNF4P78317 OR8L1P-201ENST00000534005 955 ntBASIC5.74□□□□□ -1.49
RNF4P78317 AC027287.2-201ENST00000547559 592 ntTSL 4 BASIC5.74□□□□□ -1.49
RNF4P78317 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.74□□□□□ -1.49
RNF4P78317 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 AC138907.7-201ENST00000568972 358 ntTSL 5 BASIC5.74□□□□□ -1.49
RNF4P78317 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.74□□□□□ -1.49
RNF4P78317 H3F3BP2-201ENST00000583907 357 ntBASIC5.74□□□□□ -1.49
RNF4P78317 AC017100.2-201ENST00000584628 355 ntBASIC5.74□□□□□ -1.49
RNF4P78317 NPIPB1P-202ENST00000588786 828 ntBASIC5.74□□□□□ -1.49
RNF4P78317 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.74□□□□□ -1.49
RNF4P78317 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.74□□□□□ -1.49
RNF4P78317 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC5.74□□□□□ -1.49
RNF4P78317 AC009237.17-201ENST00000618111 748 ntBASIC5.74□□□□□ -1.49
RNF4P78317 FAM27E2-201ENST00000619668 403 ntBASIC5.74□□□□□ -1.49
RNF4P78317 AC091905.1-201ENST00000624400 311 ntBASIC5.74□□□□□ -1.49
RNF4P78317 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 TCP11X1-202ENST00000622971 1372 ntBASIC5.74□□□□□ -1.49
RNF4P78317 CASC19-221ENST00000641309 1382 ntBASIC5.74□□□□□ -1.49
RNF4P78317 AC104966.1-201ENST00000467010 1464 ntBASIC5.74□□□□□ -1.49
RNF4P78317 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 CD200R1-201ENST00000295863 1692 ntTSL 2 BASIC5.74□□□□□ -1.49
RNF4P78317 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC5.74□□□□□ -1.49
RNF4P78317 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC5.74□□□□□ -1.49
RNF4P78317 IPO8-209ENST00000544829 3212 ntTSL 2 BASIC5.74□□□□□ -1.49
RNF4P78317 AC093671.1-201ENST00000624981 2929 ntBASIC5.74□□□□□ -1.49
RNF4P78317 MRE11P1-201ENST00000464884 2127 ntBASIC5.74□□□□□ -1.49
RNF4P78317 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.74□□□□□ -1.49
RNF4P78317 GTF3C3-202ENST00000409364 1736 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
RNF4P78317 AC011416.1-201ENST00000514947 1732 ntBASIC5.74□□□□□ -1.49
RNF4P78317 OR11H5P-202ENST00000641612 1325 ntBASIC5.74□□□□□ -1.49
RNF4P78317 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 MAPK10-341ENST00000641657 3860 ntAPPRIS P2 BASIC5.73□□□□□ -1.49
RNF4P78317 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 SLC35A5-201ENST00000261034 2444 ntTSL 5 BASIC5.73□□□□□ -1.49
RNF4P78317 HSPA8P17-201ENST00000427029 1382 ntBASIC5.73□□□□□ -1.49
RNF4P78317 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.73□□□□□ -1.49
RNF4P78317 GNG5P1-201ENST00000255500 204 ntBASIC5.73□□□□□ -1.49
RNF4P78317 CEP112-201ENST00000317442 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 RNU6-984P-201ENST00000363236 109 ntBASIC5.73□□□□□ -1.49
RNF4P78317 RNU6-116P-201ENST00000384042 109 ntBASIC5.73□□□□□ -1.49
RNF4P78317 HMGB3P7-201ENST00000400214 611 ntBASIC5.73□□□□□ -1.49
RNF4P78317 RNA5SP156-201ENST00000410250 110 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC5.73□□□□□ -1.49
RNF4P78317 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 HMGB3P20-201ENST00000417997 600 ntBASIC5.73□□□□□ -1.49
RNF4P78317 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC5.73□□□□□ -1.49
RNF4P78317 AC130360.1-201ENST00000425489 1117 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC5.73□□□□□ -1.49
RNF4P78317 AL136231.1-201ENST00000429407 730 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AC007679.3-201ENST00000434035 414 ntBASIC5.73□□□□□ -1.49
RNF4P78317 RPL22P17-201ENST00000438729 315 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.73□□□□□ -1.49
RNF4P78317 AL022237.1-201ENST00000446663 358 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AL035551.1-201ENST00000446931 348 ntBASIC5.73□□□□□ -1.49
RNF4P78317 SDCBP-205ENST00000447267 772 ntTSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 AC002553.3-201ENST00000453002 341 ntBASIC5.73□□□□□ -1.49
RNF4P78317 PPIAP7-201ENST00000454070 489 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AL133244.1-201ENST00000456007 258 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AC009963.3-201ENST00000458090 486 ntBASIC5.73□□□□□ -1.49
RNF4P78317 RN7SL221P-201ENST00000466190 281 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AC087312.1-201ENST00000471411 480 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AC007182.2-201ENST00000489251 402 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AC113346.1-201ENST00000510150 287 ntTSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 LRRC34P2-201ENST00000514850 553 ntBASIC5.73□□□□□ -1.49
RNF4P78317 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
RNF4P78317 Y_RNA.693-201ENST00000516641 110 ntBASIC5.73□□□□□ -1.49
RNF4P78317 AC133634.1-201ENST00000517695 566 ntTSL 3 BASIC5.73□□□□□ -1.49
RNF4P78317 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC5.73□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms