Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC5.27□□□□□ -1.57
MSX2P35548 HMGN1P9-201ENST00000515212 298 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC5.27□□□□□ -1.57
MSX2P35548 RN7SKP31-201ENST00000516354 278 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.27□□□□□ -1.57
MSX2P35548 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC5.27□□□□□ -1.57
MSX2P35548 PMS2P3-207ENST00000529061 717 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AC109635.3-201ENST00000529536 185 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AC116535.2-201ENST00000532365 441 ntTSL 5 BASIC5.27□□□□□ -1.57
MSX2P35548 LSM3P2-201ENST00000551246 273 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.27□□□□□ -1.57
MSX2P35548 HSPE1P2-201ENST00000554777 306 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AL137129.1-201ENST00000555937 720 ntTSL 4 BASIC5.27□□□□□ -1.57
MSX2P35548 AC024560.3-201ENST00000608482 349 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AC006566.1-201ENST00000608943 513 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AC138965.3-201ENST00000623875 498 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AL356596.1-201ENST00000624230 379 ntBASIC5.27□□□□□ -1.57
MSX2P35548 AC015726.3-201ENST00000624501 418 ntBASIC5.27□□□□□ -1.57
MSX2P35548 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.27□□□□□ -1.57
MSX2P35548 AC010325.3-201ENST00000641084 394 ntBASIC5.27□□□□□ -1.57
MSX2P35548 SAGE1-203ENST00000537770 1824 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
MSX2P35548 MGC4859-201ENST00000634803 3118 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
MSX2P35548 AL354854.1-201ENST00000455940 1363 ntBASIC5.27□□□□□ -1.57
MSX2P35548 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
MSX2P35548 PABPC1P9-201ENST00000426076 1612 ntBASIC5.26□□□□□ -1.57
MSX2P35548 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSX2P35548 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC5.26□□□□□ -1.57
MSX2P35548 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX2P35548 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSX2P35548 AC011755.1-201ENST00000623763 2049 ntBASIC5.26□□□□□ -1.57
MSX2P35548 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
MSX2P35548 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
MSX2P35548 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
MSX2P35548 ZNF260-204ENST00000592282 5055 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSX2P35548 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSX2P35548 OR9G4-201ENST00000302957 984 ntBASIC5.26□□□□□ -1.57
MSX2P35548 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSX2P35548 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSX2P35548 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
MSX2P35548 RNU6-1339P-201ENST00000363574 91 ntBASIC5.26□□□□□ -1.57
MSX2P35548 RNA5SP232-201ENST00000364144 119 ntBASIC5.26□□□□□ -1.57
MSX2P35548 RNU6-374P-201ENST00000364146 108 ntBASIC5.26□□□□□ -1.57
MSX2P35548 OR1L6-202ENST00000373684 1044 ntBASIC5.26□□□□□ -1.57
MSX2P35548 MAPK8-202ENST00000374174 739 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
MSX2P35548 RPL17P50-201ENST00000396131 546 ntBASIC5.26□□□□□ -1.57
MSX2P35548 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX2P35548 AC016739.1-201ENST00000405359 345 ntBASIC5.26□□□□□ -1.57
MSX2P35548 NCSTNP1-201ENST00000406229 144 ntBASIC5.26□□□□□ -1.57
MSX2P35548 RNA5SP198-201ENST00000410376 127 ntBASIC5.26□□□□□ -1.57
MSX2P35548 AL109610.1-201ENST00000414598 431 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX2P35548 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.26□□□□□ -1.57
MSX2P35548 FTH1P16-201ENST00000435241 552 ntBASIC5.26□□□□□ -1.57
MSX2P35548 RPL12P11-201ENST00000439970 501 ntBASIC5.26□□□□□ -1.57
MSX2P35548 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSX2P35548 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 LINC01004-201ENST00000445184 686 ntTSL 5 BASIC5.26□□□□□ -1.57
MSX2P35548 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX2P35548 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 AL596266.1-201ENST00000448132 400 ntBASIC5.26□□□□□ -1.57
MSX2P35548 COX6CP18-201ENST00000448769 222 ntBASIC5.26□□□□□ -1.57
MSX2P35548 GAPDHP14-201ENST00000450472 937 ntBASIC5.26□□□□□ -1.57
MSX2P35548 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC5.26□□□□□ -1.57
MSX2P35548 AL034349.1-201ENST00000458367 549 ntTSL 5 BASIC5.26□□□□□ -1.57
MSX2P35548 AL121769.1-201ENST00000469473 401 ntBASIC5.26□□□□□ -1.57
MSX2P35548 AC092865.4-201ENST00000477936 615 ntBASIC5.26□□□□□ -1.57
MSX2P35548 AC079841.1-201ENST00000481228 950 ntBASIC5.26□□□□□ -1.57
MSX2P35548 AC041039.1-201ENST00000485656 536 ntBASIC5.26□□□□□ -1.57
MSX2P35548 RN7SL568P-201ENST00000493069 298 ntBASIC5.26□□□□□ -1.57
MSX2P35548 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC5.26□□□□□ -1.57
MSX2P35548 AC108062.1-201ENST00000505133 637 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX2P35548 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC5.26□□□□□ -1.57
MSX2P35548 LINC02384-206ENST00000541707 904 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 AC008083.2-201ENST00000546707 476 ntBASIC5.26□□□□□ -1.57
MSX2P35548 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX2P35548 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC5.26□□□□□ -1.57
MSX2P35548 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX2P35548 AMZ2-204ENST00000577273 895 ntTSL 5 BASIC5.26□□□□□ -1.57
MSX2P35548 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC5.26□□□□□ -1.57
MSX2P35548 AC133552.5-201ENST00000604266 540 ntBASIC5.26□□□□□ -1.57
MSX2P35548 MESTIT1_2.1-201ENST00000616328 235 ntBASIC5.26□□□□□ -1.57
MSX2P35548 MALAT1-210ENST00000617489 318 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX2P35548 AL442125.2-201ENST00000619338 418 ntTSL 5 BASIC5.26□□□□□ -1.57
MSX2P35548 MIR6806-201ENST00000622141 64 ntBASIC5.26□□□□□ -1.57
MSX2P35548 AC006840.1-201ENST00000623069 542 ntBASIC5.26□□□□□ -1.57
MSX2P35548 C7orf66-201ENST00000624695 435 ntTSL 2 BASIC5.26□□□□□ -1.57
MSX2P35548 AL157786.1-207ENST00000627771 695 ntBASIC5.26□□□□□ -1.57
MSX2P35548 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSX2P35548 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
MSX2P35548 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
MSX2P35548 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
MSX2P35548 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
MSX2P35548 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.26□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms