Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 OR6K4P-201ENST00000423179 955 ntBASIC4.53□□□□□ -1.68
MSH3P20585 DEFB130D-201ENST00000426866 237 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC060834.2-201ENST00000447999 618 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH3P20585 AL356289.2-201ENST00000455238 292 ntTSL 5 BASIC4.53□□□□□ -1.68
MSH3P20585 PSMC1P13-201ENST00000458195 985 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC004692.2-202ENST00000458680 478 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH3P20585 RNU6ATAC28P-201ENST00000459249 118 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC096741.1-201ENST00000472250 846 ntBASIC4.53□□□□□ -1.68
MSH3P20585 RPS29P22-201ENST00000472363 168 ntBASIC4.53□□□□□ -1.68
MSH3P20585 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH3P20585 RN7SL41P-201ENST00000476144 297 ntBASIC4.53□□□□□ -1.68
MSH3P20585 RN7SL817P-201ENST00000480777 288 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC4.53□□□□□ -1.68
MSH3P20585 AC113430.1-201ENST00000506872 718 ntBASIC4.53□□□□□ -1.68
MSH3P20585 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH3P20585 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH3P20585 CDH12P4-201ENST00000517835 295 ntBASIC4.53□□□□□ -1.68
MSH3P20585 CDH12P3-201ENST00000517935 295 ntBASIC4.53□□□□□ -1.68
MSH3P20585 CDH12P1-201ENST00000518435 295 ntBASIC4.53□□□□□ -1.68
MSH3P20585 HIGD1AP18-201ENST00000520730 278 ntBASIC4.53□□□□□ -1.68
MSH3P20585 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 CASP1-216ENST00000534497 825 ntTSL 5 BASIC4.53□□□□□ -1.68
MSH3P20585 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC4.53□□□□□ -1.68
MSH3P20585 AC137768.1-201ENST00000549998 553 ntBASIC4.53□□□□□ -1.68
MSH3P20585 MTND1P24-201ENST00000552175 861 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC112693.1-201ENST00000555297 682 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH3P20585 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC4.53□□□□□ -1.68
MSH3P20585 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH3P20585 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.53□□□□□ -1.68
MSH3P20585 AC010735.1-201ENST00000567305 1026 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH3P20585 AC069061.3-201ENST00000582254 823 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH3P20585 RPL7P50-201ENST00000600588 727 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC008966.2-201ENST00000606157 453 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.53□□□□□ -1.68
MSH3P20585 AC023813.4-201ENST00000607580 580 ntBASIC4.53□□□□□ -1.68
MSH3P20585 AL133243.1-201ENST00000614487 366 ntBASIC4.53□□□□□ -1.68
MSH3P20585 RN7SL722P-201ENST00000617780 284 ntBASIC4.53□□□□□ -1.68
MSH3P20585 RN7SL565P-201ENST00000618246 284 ntBASIC4.53□□□□□ -1.68
MSH3P20585 LGALS13-204ENST00000621475 494 ntAPPRIS ALT2 TSL 5 BASIC4.53□□□□□ -1.68
MSH3P20585 CHRM3-AS2-209ENST00000628573 766 ntTSL 5 BASIC4.53□□□□□ -1.68
MSH3P20585 AL590396.4-201ENST00000636779 956 ntBASIC4.53□□□□□ -1.68
MSH3P20585 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC4.53□□□□□ -1.68
MSH3P20585 LINC01808-202ENST00000641680 1116 ntBASIC4.53□□□□□ -1.68
MSH3P20585 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC4.53□□□□□ -1.68
MSH3P20585 ORC3-202ENST00000392844 2512 ntAPPRIS ALT1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
MSH3P20585 UGT2B10-202ENST00000458688 1424 ntTSL 2 BASIC4.53□□□□□ -1.68
MSH3P20585 MFSD8-242ENST00000641690 4199 ntBASIC4.53□□□□□ -1.68
MSH3P20585 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSH3P20585 AL672167.1-203ENST00000641299 2975 ntBASIC4.52□□□□□ -1.69
MSH3P20585 RNU1-20P-201ENST00000363314 162 ntBASIC4.52□□□□□ -1.69
MSH3P20585 SNORA70F-201ENST00000384142 135 ntBASIC4.52□□□□□ -1.69
MSH3P20585 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC4.52□□□□□ -1.69
MSH3P20585 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.52□□□□□ -1.69
MSH3P20585 AC069213.2-201ENST00000420238 366 ntBASIC4.52□□□□□ -1.69
MSH3P20585 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
MSH3P20585 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
MSH3P20585 AC005189.1-201ENST00000431286 310 ntBASIC4.52□□□□□ -1.69
MSH3P20585 AL035458.1-201ENST00000433096 585 ntBASIC4.52□□□□□ -1.69
MSH3P20585 ARF4P4-201ENST00000439608 520 ntBASIC4.52□□□□□ -1.69
MSH3P20585 AL138878.2-201ENST00000440581 1241 ntBASIC4.52□□□□□ -1.69
MSH3P20585 RPL23AP93-201ENST00000440847 484 ntBASIC4.52□□□□□ -1.69
MSH3P20585 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.52□□□□□ -1.69
MSH3P20585 RPS20P4-201ENST00000461659 355 ntBASIC4.52□□□□□ -1.69
MSH3P20585 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.52□□□□□ -1.69
MSH3P20585 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC4.52□□□□□ -1.69
MSH3P20585 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC4.52□□□□□ -1.69
MSH3P20585 AC110760.1-201ENST00000513770 590 ntTSL 3 BASIC4.52□□□□□ -1.69
MSH3P20585 AC012625.1-201ENST00000515153 625 ntTSL 5 BASIC4.52□□□□□ -1.69
MSH3P20585 snoU109.6-201ENST00000516831 118 ntBASIC4.52□□□□□ -1.69
MSH3P20585 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC4.52□□□□□ -1.69
MSH3P20585 AP001781.1-201ENST00000530977 207 ntBASIC4.52□□□□□ -1.69
MSH3P20585 DYNLL1P4-201ENST00000549314 266 ntBASIC4.52□□□□□ -1.69
MSH3P20585 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.52□□□□□ -1.69
MSH3P20585 SULT1C2P2-201ENST00000562517 294 ntBASIC4.52□□□□□ -1.69
MSH3P20585 AC091178.1-203ENST00000584586 279 ntBASIC4.52□□□□□ -1.69
MSH3P20585 AC104785.1-201ENST00000603220 588 ntBASIC4.52□□□□□ -1.69
MSH3P20585 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC4.52□□□□□ -1.69
MSH3P20585 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
MSH3P20585 AL049536.1-201ENST00000625043 744 ntBASIC4.52□□□□□ -1.69
MSH3P20585 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC4.52□□□□□ -1.69
MSH3P20585 AC009951.2-201ENST00000634873 644 ntTSL 5 BASIC4.52□□□□□ -1.69
MSH3P20585 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSH3P20585 AL355306.2-205ENST00000635395 1646 ntTSL 5 BASIC4.52□□□□□ -1.69
MSH3P20585 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSH3P20585 DHX40P1-201ENST00000588725 1412 ntBASIC4.52□□□□□ -1.69
MSH3P20585 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.52□□□□□ -1.69
MSH3P20585 TCN1-201ENST00000257264 1582 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSH3P20585 AC125257.1-201ENST00000560400 2930 ntBASIC4.52□□□□□ -1.69
MSH3P20585 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
MSH3P20585 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSH3P20585 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.51□□□□□ -1.69
MSH3P20585 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSH3P20585 SPINT4-201ENST00000279058 512 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSH3P20585 HIST1H2BD-201ENST00000289316 789 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
MSH3P20585 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 82 ms