Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC6.12□□□□□ -1.43
HMGB1P09429 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC6.12□□□□□ -1.43
HMGB1P09429 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC6.12□□□□□ -1.43
HMGB1P09429 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC6.12□□□□□ -1.43
HMGB1P09429 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
HMGB1P09429 RRAS2-202ENST00000414023 1884 ntTSL 2 BASIC6.11□□□□□ -1.43
HMGB1P09429 Z99496.1-201ENST00000469424 1477 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 AC020637.1-201ENST00000546977 1447 ntTSL 5 BASIC6.11□□□□□ -1.43
HMGB1P09429 ZNF37BP-203ENST00000452306 1352 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC6.11□□□□□ -1.43
HMGB1P09429 OR4P4-201ENST00000314612 939 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
HMGB1P09429 MIR600-201ENST00000385007 98 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 KLRC3-202ENST00000396439 1028 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
HMGB1P09429 AL079342.2-201ENST00000403367 482 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 OFD1P18Y-201ENST00000420889 959 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 DPRXP1-201ENST00000426312 460 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.11□□□□□ -1.43
HMGB1P09429 COX6CP13-201ENST00000428703 226 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC6.11□□□□□ -1.43
HMGB1P09429 RPL23AP16-201ENST00000441715 421 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HMGB1P09429 AC002383.1-201ENST00000448260 671 ntTSL 5 BASIC6.11□□□□□ -1.43
HMGB1P09429 AC022034.3-201ENST00000471393 478 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC6.11□□□□□ -1.43
HMGB1P09429 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HMGB1P09429 ATP5LP3-201ENST00000514223 304 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 PTK2-220ENST00000520151 573 ntTSL 4 BASIC6.11□□□□□ -1.43
HMGB1P09429 AF117829.1-202ENST00000524166 836 ntTSL 3 BASIC6.11□□□□□ -1.43
HMGB1P09429 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC6.11□□□□□ -1.43
HMGB1P09429 AC007424.1-203ENST00000554613 687 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 AC007495.1-203ENST00000569025 888 ntTSL 5 BASIC6.11□□□□□ -1.43
HMGB1P09429 BNIP3P35-201ENST00000604530 490 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 AL136370.1-201ENST00000608166 691 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC6.11□□□□□ -1.43
HMGB1P09429 WWOX-217ENST00000620008 450 ntTSL 2 BASIC6.11□□□□□ -1.43
HMGB1P09429 AC009269.6-201ENST00000621778 588 ntBASIC6.11□□□□□ -1.43
HMGB1P09429 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
HMGB1P09429 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC6.11□□□□□ -1.43
HMGB1P09429 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HMGB1P09429 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC6.11□□□□□ -1.43
HMGB1P09429 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
HMGB1P09429 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC6.11□□□□□ -1.43
HMGB1P09429 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
HMGB1P09429 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
HMGB1P09429 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
HMGB1P09429 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC6.1□□□□□ -1.43
HMGB1P09429 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC6.1□□□□□ -1.43
HMGB1P09429 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 CCDC54-201ENST00000261058 1444 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
HMGB1P09429 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC6.1□□□□□ -1.43
HMGB1P09429 ADAM5-202ENST00000399789 1942 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
HMGB1P09429 SNORA17.1-201ENST00000362945 126 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 RN7SKP113-201ENST00000363891 295 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 AL161909.1-201ENST00000397390 712 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC6.1□□□□□ -1.43
HMGB1P09429 AC241584.1-201ENST00000438469 1241 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 TVP23BP2-201ENST00000455082 615 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 TRBV26-201ENST00000456572 344 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC6.1□□□□□ -1.43
HMGB1P09429 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC6.1□□□□□ -1.43
HMGB1P09429 MTCYBP37-201ENST00000510642 1133 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 SNORA48.10-201ENST00000516965 160 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 AC108515.1-201ENST00000517407 525 ntTSL 3 BASIC6.1□□□□□ -1.43
HMGB1P09429 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC6.1□□□□□ -1.43
HMGB1P09429 RRAS2-205ENST00000529237 1278 ntTSL 2 BASIC6.1□□□□□ -1.43
HMGB1P09429 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC6.1□□□□□ -1.43
HMGB1P09429 AL133372.3-201ENST00000553082 821 ntTSL 3 BASIC6.1□□□□□ -1.43
HMGB1P09429 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
HMGB1P09429 AC010928.3-201ENST00000587712 541 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 MIR6768-201ENST00000610734 72 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC6.1□□□□□ -1.43
HMGB1P09429 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 AC008758.3-201ENST00000507003 1829 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 GABPB1-AS1-202ENST00000499624 16182 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 AC011493.1-201ENST00000596753 1632 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 MUC2-202ENST00000613187 4845 ntBASIC6.1□□□□□ -1.43
HMGB1P09429 XIRP2-203ENST00000409195 12675 ntTSL 5 BASIC6.1□□□□□ -1.43
HMGB1P09429 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
HMGB1P09429 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HMGB1P09429 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
HMGB1P09429 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HMGB1P09429 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
HMGB1P09429 A2MP1-204ENST00000566278 4130 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HMGB1P09429 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HMGB1P09429 HTN1-201ENST00000246896 580 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HMGB1P09429 RNU6-251P-201ENST00000363235 104 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 RNU6-707P-201ENST00000364647 95 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 RNU6-1300P-201ENST00000391046 108 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 AL035079.1-201ENST00000405210 287 ntBASIC6.09□□□□□ -1.43
HMGB1P09429 MIR1286-201ENST00000408112 78 ntBASIC6.09□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 167.7 ms