Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 AC005332.7-201ENST00000614046 2005 ntBASIC18.71■□□□□ 0.59
VPS4AQ9UN37 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 AC098818.2-201ENST00000564925 2320 ntBASIC18.71■□□□□ 0.59
VPS4AQ9UN37 POM121L13P-201ENST00000422362 380 ntBASIC18.71■□□□□ 0.59
VPS4AQ9UN37 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 TK2-213ENST00000563369 882 ntTSL 5 BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 MIR4785-201ENST00000585005 73 ntBASIC18.71■□□□□ 0.59
VPS4AQ9UN37 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
VPS4AQ9UN37 AC093484.2-201ENST00000580996 2166 ntBASIC18.71■□□□□ 0.59
VPS4AQ9UN37 BX323043.1-201ENST00000641006 1765 ntBASIC18.7■□□□□ 0.58
VPS4AQ9UN37 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 AC018445.3-201ENST00000624177 1945 ntBASIC18.7■□□□□ 0.58
VPS4AQ9UN37 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VPS4AQ9UN37 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 AL020996.1-203ENST00000536896 2307 ntBASIC18.69■□□□□ 0.58
VPS4AQ9UN37 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS4AQ9UN37 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 AL135905.2-201ENST00000584934 1404 ntBASIC18.68■□□□□ 0.58
VPS4AQ9UN37 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS4AQ9UN37 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms