Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC36.88■■■■□ 3.5
SHROOM4Q9ULL8 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC36.88■■■■□ 3.5
SHROOM4Q9ULL8 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC36.88■■■■□ 3.5
SHROOM4Q9ULL8 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC36.88■■■■□ 3.5
SHROOM4Q9ULL8 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC36.88■■■■□ 3.5
SHROOM4Q9ULL8 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC36.88■■■■□ 3.5
SHROOM4Q9ULL8 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC36.88■■■■□ 3.49
SHROOM4Q9ULL8 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC36.88■■■■□ 3.49
SHROOM4Q9ULL8 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
SHROOM4Q9ULL8 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC36.88■■■■□ 3.49
SHROOM4Q9ULL8 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
SHROOM4Q9ULL8 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC36.88■■■■□ 3.49
SHROOM4Q9ULL8 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
SHROOM4Q9ULL8 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC36.88■■■■□ 3.49
SHROOM4Q9ULL8 AP000347.1-202ENST00000435868 847 ntBASIC36.88■■■■□ 3.49
SHROOM4Q9ULL8 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC36.88■■■■□ 3.49
SHROOM4Q9ULL8 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.49
SHROOM4Q9ULL8 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC36.87■■■■□ 3.49
SHROOM4Q9ULL8 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC36.87■■■■□ 3.49
SHROOM4Q9ULL8 LINC01465-201ENST00000408887 1940 ntBASIC36.87■■■■□ 3.49
SHROOM4Q9ULL8 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC36.87■■■■□ 3.49
SHROOM4Q9ULL8 AL691432.2-201ENST00000607222 2038 ntBASIC36.87■■■■□ 3.49
SHROOM4Q9ULL8 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC36.87■■■■□ 3.49
SHROOM4Q9ULL8 AC004951.3-201ENST00000418645 1148 ntBASIC36.87■■■■□ 3.49
SHROOM4Q9ULL8 TSPY17P-201ENST00000450329 467 ntBASIC36.87■■■■□ 3.49
SHROOM4Q9ULL8 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC36.87■■■■□ 3.49
SHROOM4Q9ULL8 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC36.87■■■■□ 3.49
SHROOM4Q9ULL8 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC36.87■■■■□ 3.49
SHROOM4Q9ULL8 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC36.86■■■■□ 3.49
SHROOM4Q9ULL8 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC36.86■■■■□ 3.49
SHROOM4Q9ULL8 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC36.86■■■■□ 3.49
SHROOM4Q9ULL8 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC36.86■■■■□ 3.49
SHROOM4Q9ULL8 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC36.86■■■■□ 3.49
SHROOM4Q9ULL8 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC36.86■■■■□ 3.49
SHROOM4Q9ULL8 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC36.86■■■■□ 3.49
SHROOM4Q9ULL8 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC36.86■■■■□ 3.49
SHROOM4Q9ULL8 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC36.86■■■■□ 3.49
SHROOM4Q9ULL8 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC36.86■■■■□ 3.49
SHROOM4Q9ULL8 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC36.86■■■■□ 3.49
SHROOM4Q9ULL8 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
SHROOM4Q9ULL8 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC36.85■■■■□ 3.49
SHROOM4Q9ULL8 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC36.85■■■■□ 3.49
SHROOM4Q9ULL8 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC36.85■■■■□ 3.49
SHROOM4Q9ULL8 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC36.85■■■■□ 3.49
SHROOM4Q9ULL8 CNP-204ENST00000472031 1019 ntTSL 2 BASIC36.85■■■■□ 3.49
SHROOM4Q9ULL8 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC36.85■■■■□ 3.49
SHROOM4Q9ULL8 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC36.85■■■■□ 3.49
SHROOM4Q9ULL8 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC36.85■■■■□ 3.49
SHROOM4Q9ULL8 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC36.85■■■■□ 3.49
SHROOM4Q9ULL8 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC36.85■■■■□ 3.49
SHROOM4Q9ULL8 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC36.84■■■■□ 3.49
SHROOM4Q9ULL8 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC36.84■■■■□ 3.49
SHROOM4Q9ULL8 FEM1AP1-201ENST00000431297 1995 ntBASIC36.84■■■■□ 3.49
SHROOM4Q9ULL8 CA15P1-201ENST00000481698 905 ntBASIC36.84■■■■□ 3.49
SHROOM4Q9ULL8 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC36.84■■■■□ 3.49
SHROOM4Q9ULL8 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC36.84■■■■□ 3.49
SHROOM4Q9ULL8 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC36.84■■■■□ 3.49
SHROOM4Q9ULL8 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC36.84■■■■□ 3.49
SHROOM4Q9ULL8 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC36.84■■■■□ 3.49
SHROOM4Q9ULL8 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC36.84■■■■□ 3.49
SHROOM4Q9ULL8 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC36.84■■■■□ 3.49
SHROOM4Q9ULL8 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 AC006538.3-201ENST00000612495 578 ntBASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 CR769767.2-201ENST00000622735 460 ntBASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 PNKP-224ENST00000631020 1545 ntTSL 5 BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC36.83■■■■□ 3.49
SHROOM4Q9ULL8 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC36.82■■■■□ 3.49
SHROOM4Q9ULL8 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.49
SHROOM4Q9ULL8 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC36.82■■■■□ 3.49
SHROOM4Q9ULL8 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC36.82■■■■□ 3.49
SHROOM4Q9ULL8 AC111152.3-201ENST00000569699 673 ntBASIC36.82■■■■□ 3.49
SHROOM4Q9ULL8 AL023973.1-201ENST00000624619 620 ntBASIC36.82■■■■□ 3.49
SHROOM4Q9ULL8 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC36.82■■■■□ 3.49
SHROOM4Q9ULL8 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.49
SHROOM4Q9ULL8 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC36.82■■■■□ 3.49
SHROOM4Q9ULL8 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC36.82■■■■□ 3.48
SHROOM4Q9ULL8 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.48
SHROOM4Q9ULL8 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.48
SHROOM4Q9ULL8 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.48
SHROOM4Q9ULL8 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.48
SHROOM4Q9ULL8 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC36.82■■■■□ 3.48
SHROOM4Q9ULL8 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC36.82■■■■□ 3.48
SHROOM4Q9ULL8 ZNF444P1-201ENST00000559497 298 ntBASIC36.82■■■■□ 3.48
SHROOM4Q9ULL8 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC36.82■■■■□ 3.48
SHROOM4Q9ULL8 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 KRT8P10-201ENST00000450021 1447 ntBASIC36.81■■■■□ 3.48
SHROOM4Q9ULL8 LY6E-203ENST00000517503 1335 ntAPPRIS ALT2 TSL 3 BASIC36.81■■■■□ 3.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.3 ms