Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PTCHD1Q96NR3 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 TSPY7P-201ENST00000431358 1114 ntBASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 NME1-207ENST00000480143 964 ntTSL 2 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 PENK-204ENST00000518770 863 ntTSL 2 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 AC125437.2-201ENST00000625180 2167 ntBASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PTCHD1Q96NR3 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PTCHD1Q96NR3 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTCHD1Q96NR3 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.27■□□□□ 0.51
PTCHD1Q96NR3 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 KRT16P1-201ENST00000399124 1418 ntBASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 YAP1-201ENST00000282441 5386 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.26■□□□□ 0.51
PTCHD1Q96NR3 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 KRT17P2-201ENST00000300992 1314 ntBASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
PTCHD1Q96NR3 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 31.8 ms