Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 IFNL4P1-201ENST00000607083 540 ntBASIC13.51□□□□□ -0.25
CSMD3Q7Z407 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 BX119927.1-201ENST00000636596 1552 ntBASIC13.51□□□□□ -0.25
CSMD3Q7Z407 FEM1AP1-201ENST00000431297 1995 ntBASIC13.51□□□□□ -0.25
CSMD3Q7Z407 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC13.51□□□□□ -0.25
CSMD3Q7Z407 ZNF444P1-201ENST00000559497 298 ntBASIC13.51□□□□□ -0.25
CSMD3Q7Z407 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 ILF2-202ENST00000368681 726 ntTSL 2 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 DERL1-203ENST00000419562 918 ntTSL 2 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 AC106795.1-205ENST00000512851 1056 ntBASIC13.5□□□□□ -0.25
CSMD3Q7Z407 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC13.5□□□□□ -0.25
CSMD3Q7Z407 CYP2D7-203ENST00000433992 1740 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 CYP2D7-207ENST00000612115 1734 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 AC121338.2-201ENST00000622535 1744 ntBASIC13.49□□□□□ -0.25
CSMD3Q7Z407 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 PRELID1P1-202ENST00000567272 903 ntBASIC13.49□□□□□ -0.25
CSMD3Q7Z407 AC140113.3-201ENST00000605663 199 ntBASIC13.49□□□□□ -0.25
CSMD3Q7Z407 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CSMD3Q7Z407 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CSMD3Q7Z407 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms