Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 PRELID1P1-202ENST00000567272 903 ntBASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 AL671883.3-201ENST00000603274 991 ntBASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC23.81■■□□□ 1.4
CCDC88AQ3V6T2 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 REEP5-202ENST00000379638 3326 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 KRT17P6-201ENST00000453795 1220 ntBASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
CCDC88AQ3V6T2 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 Telomerase-vert.1-201ENST00000363312 438 ntBASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 NT5C-210ENST00000582160 860 ntTSL 2 BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 AC079781.3-201ENST00000449110 356 ntBASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 NEK4P2-201ENST00000580004 1012 ntBASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
CCDC88AQ3V6T2 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC88AQ3V6T2 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC88AQ3V6T2 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC23.78■■□□□ 1.4
CCDC88AQ3V6T2 AC004870.1-201ENST00000315132 882 ntBASIC23.78■■□□□ 1.4
CCDC88AQ3V6T2 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC23.78■■□□□ 1.4
CCDC88AQ3V6T2 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC88AQ3V6T2 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC23.78■■□□□ 1.4
CCDC88AQ3V6T2 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC88AQ3V6T2 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
CCDC88AQ3V6T2 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC23.77■■□□□ 1.4
CCDC88AQ3V6T2 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.39
CCDC88AQ3V6T2 HMBS-221ENST00000544387 1351 ntTSL 2 BASIC23.77■■□□□ 1.39
CCDC88AQ3V6T2 KRT8P8-201ENST00000434750 1448 ntBASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 DMKN-207ENST00000419602 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 CNOT9-209ENST00000627282 1621 ntTSL 2 BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 AL031008.1-201ENST00000619963 541 ntBASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 LINC01311-201ENST00000565162 1445 ntBASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC23.76■■□□□ 1.39
CCDC88AQ3V6T2 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC23.75■■□□□ 1.39
CCDC88AQ3V6T2 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC23.75■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms